LXL04_003704 | RubberDandelionOmics

Gene overview

LXL04_003704

Reference: OH-1004 Chr: Chr01 Coordinates: 96135482-96140790 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2325 bp · LXL04_003704|LXL04_003704|OH1004|cDNA

ATGGGAAGATCCAAAATATTTCATCTCTTAATCTTCTTCTGTATATGTCTTGTCATCATAGCTGTGCCCACACctgatgaaaatgaaagaaagACTTACATTGTATACATGGGAGCTTCTCCCGTAAAGAGGACAATAACGTCCATCGAGCATCATCACTATAGTCTTCTTTCAGAGACCATTGGAGACGAAAAACTAGCAAGAGATTCCAAGTTGCATAGTTATGGAAGGAGCTTTAATGGCTTTGTGGCAAATCTATT...

CDS

Download CDS FASTA

2325 bp · LXL04_003704|LXL04_003704|OH1004|CDS

ATGGGAAGATCCAAAATATTTCATCTCTTAATCTTCTTCTGTATATGTCTTGTCATCATAGCTGTGCCCACACCTGATGAAAATGAAAGAAAGACTTACATTGTATACATGGGAGCTTCTCCCGTAAAGAGGACAATAACGTCCATCGAGCATCATCACTATAGTCTTCTTTCAGAGACCATTGGAGACGAAAAACTAGCAAGAGATTCCAAGTTGCATAGTTATGGAAGGAGCTTTAATGGCTTTGTGGCAAATCTATT...

Protein

Download Protein FASTA

774 aa · LXL04_003704|LXL04_003704|OH1004|PROTEIN

MGRSKIFHLLIFFCICLVIIAVPTPDENERKTYIVYMGASPVKRTITSIEHHHYSLLSETIGDEKLARDSKLHSYGRSFNGFVANLLPQEANDLSQKESVLSVFPNTIRPLHTTRSWDFIGMPLRRTKRNITAESDLIIGVLDTGIWPESPSFNDKGYGPPPTKWRGKCFLGGNFTGCNNKVIGAQYSYIATTPDPKLSPVDTEGHGTHTASTAAGVPVRGASLYGIGRGTARGGVPSARIAAYKVCWGGGCSDADLLAG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003704`
TK1151 ID	TkA01G296040
OH-1004 ID	LXL04_003704
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 99.867 / OH-1004 97.287 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003704

Location Chr01:96135482-96140790 (+)

Description Similar to SBT4.15: Subtilisin-like protease SBT4.15

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03620`	Subtilisin-like protease SBT4.15.	No verified direct reference in this release
`At4g00230`	Subtilisin-like protease SBT4.14.	No verified direct reference in this release
`At5g59190`	Subtilisin-like protease SBT4.3.	No verified direct reference in this release
`At5g59090`	Subtilisin-like protease SBT4.12.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_003704 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009609 response to symbiotic bacterium Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0004252 serine-type endopeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT4G00230

ath:AT5G03620

ath:AT5G59090

ath:AT5G59190

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.616

Rank 1 · LXL04_003704 · OH-1004

Lysosome / Vacuole0.120

Rank 2 · LXL04_003704 · OH-1004

Cell membrane0.100

Rank 3 · LXL04_003704 · OH-1004

Cytoplasm0.077

Rank 4 · LXL04_003704 · OH-1004

Endoplasmic reticulum0.063

Rank 5 · LXL04_003704 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05922.22Inhibitor_I932-112 aa

PF00082.28Peptidase_S8136-571 aa

PF17766.8fn3_6641-740 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003704	`PF05922.22`	Inhibitor_I9	32	112	4.7e-16	59.9
LXL04_003704	`PF00082.28`	Peptidase_S8	136	571	6.1e-48	164.3
LXL04_003704	`PF17766.8`	fn3_6	641	740	3.4e-25	88.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LZS6`	Arabidopsis thaliana	Subtilisin-like protease SBT4.15	52.450%	Swiss-Prot	strong database homology
`Q9LLL8`	Arabidopsis thaliana	Subtilisin-like protease SBT4.14	48.343%	Swiss-Prot	moderate database homology
`Q9FIF8`	Arabidopsis thaliana	Subtilisin-like protease SBT4.3	46.658%	Swiss-Prot	moderate database homology
`Q8L7D2`	Arabidopsis thaliana	Subtilisin-like protease SBT4.12	45.592%	Swiss-Prot	moderate database homology

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