LXL04_003526 | RubberDandelionOmics

Gene overview

LXL04_003526

Reference: OH-1004 Chr: Chr01 Coordinates: 82360371-82366223 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2325 bp · LXL04_003526|LXL04_003526|OH1004|cDNA

ATGGAGTCAAGAATGGATCAGTACGAGATGATGGAGCAAATCGGGCGGGGTGCTTTTGGTGCCGCCATTCTCGTTAACCATAAATTGGAAAAAACCAAGTATGTTTTAAAGAAGATTCGTCTTGCTAGACAGACTGAACGTTGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTCGGATTCAGCACCCATTTATTGTTGAATTTAAAGAAGCATGGGTTGAGAAGGGTTGCTATGTTTGCATTGTCACTGGTTA...

CDS

Download CDS FASTA

2325 bp · LXL04_003526|LXL04_003526|OH1004|CDS

ATGGAGTCAAGAATGGATCAGTACGAGATGATGGAGCAAATCGGGCGGGGTGCTTTTGGTGCCGCCATTCTCGTTAACCATAAATTGGAAAAAACCAAGTATGTTTTAAAGAAGATTCGTCTTGCTAGACAGACTGAACGTTGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTCGGATTCAGCACCCATTTATTGTTGAATTTAAAGAAGCATGGGTTGAGAAGGGTTGCTATGTTTGCATTGTCACTGGTTA...

Protein

Download Protein FASTA

774 aa · LXL04_003526|LXL04_003526|OH1004|PROTEIN

MESRMDQYEMMEQIGRGAFGAAILVNHKLEKTKYVLKKIRLARQTERCRRSAHQEMALIARIQHPFIVEFKEAWVEKGCYVCIVTGYCEGGDIAELMKKSMGQYFPEEKLCKWFTQILLAVEYLHSNYVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCMYEMAAHRPAFKAFDMAGLISKINRSCIGPLPPCYSPSLKILIKGMLRKNPEHRPSATEILKHP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003526`
TK1151 ID	TkA01G345970
OH-1004 ID	LXL04_003526
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	74.600
Protein coverage (%)	TK1151 100.000 / OH-1004 56.460 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003526

Location Chr01:82360371-82366223 (+)

Description Similar to NEK5: Serine/threonine-protein kinase Nek5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g44200`	Involved in epidermal-cell morphogenesis in hypocotyls and roots.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0864700`	May be involved in plant development processes.	No verified direct reference in this release
`Os05g0440800`	May be involved in plant development processes.	No verified direct reference in this release
`Os12g0604700`	May be involved in plant development processes.	No verified direct reference in this release
`UniProt: A2ZMH2`	May be involved in plant development processes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003526 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007017 microtubule-based process Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0090627 plant epidermal cell differentiation Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0055028 cortical microtubule Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G44200

dosa:Os01g0864700

dosa:Os05g0440800

osa:4324792

osa:4338922

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.614

Rank 1 · LXL04_003526 · OH-1004

Nucleus0.255

Rank 2 · LXL04_003526 · OH-1004

Cell membrane0.238

Rank 3 · LXL04_003526 · OH-1004

Golgi apparatus0.075

Rank 4 · LXL04_003526 · OH-1004

Endoplasmic reticulum0.052

Rank 5 · LXL04_003526 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase8-262 aa

PF07714.24PK_Tyr_Ser-Thr9-258 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003526	`PF00069.32`	Pkinase	8	262	2.6e-65	221.1
LXL04_003526	`PF07714.24`	PK_Tyr_Ser-Thr	9	258	9.1e-40	137.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WPH8`	Arabidopsis thaliana	Serine/threonine-protein kinase Nek5	57.353%	Swiss-Prot	moderate database homology
`Q94CU5`	Oryza sativa subsp. japonica	Serine/threonine-protein kinase Nek5	66.204%	Swiss-Prot	moderate database homology
`Q60DG4`	Oryza sativa subsp. japonica	Serine/threonine-protein kinase Nek4	62.162%	Swiss-Prot	moderate database homology
`Q2QMH1`	Oryza sativa subsp. japonica	Serine/threonine-protein kinase Nek2	73.106%	Swiss-Prot	weak database homology
`A2ZMH2`	Oryza sativa subsp. indica	Serine/threonine-protein kinase Nek2	73.106%	Swiss-Prot	weak database homology

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