Gene Card
Gene overview
cDNA / CDS / Protein Sequences
870 bp · LXL04_003516|LXL04_003516|OH1004|cDNA
ATGGGAGCTCTTCAATTCCATCAACATACTCGACAGCTGCAAATATCCCCAATATTCATGACCCCAATTTTTTCCTGTAATCTCAGGGCTATCACAGCGACACTTTGCTTACGCTCTATCGTCTCCGAGCGTTTCTCTACCTCTCTCCCAAAATTATGCTCAACTAGGAGTGCTAAAGTCAAGGCAATAAGTAGGGTTTCTGCTGATGAGCTCAAAGAGAAATGGCTACATTCTCTCACTTGCACTCCTCCCCTCAAGGA...
870 bp · LXL04_003516|LXL04_003516|OH1004|CDS
ATGGGAGCTCTTCAATTCCATCAACATACTCGACAGCTGCAAATATCCCCAATATTCATGACCCCAATTTTTTCCTGTAATCTCAGGGCTATCACAGCGACACTTTGCTTACGCTCTATCGTCTCCGAGCGTTTCTCTACCTCTCTCCCAAAATTATGCTCAACTAGGAGTGCTAAAGTCAAGGCAATAAGTAGGGTTTCTGCTGATGAGCTCAAAGAGAAATGGCTACATTCTCTCACTTGCACTCCTCCCCTCAAGGA...
Protein
Download Protein FASTA289 aa · LXL04_003516|LXL04_003516|OH1004|PROTEIN
MGALQFHQHTRQLQISPIFMTPIFSCNLRAITATLCLRSIVSERFSTSLPKLCSTRSAKVKAISRVSADELKEKWLHSLTCTPPLKETENLILEDDVSFGNGEVPSASQWVIGIDPDVSGALAILKTDDLGCSAQVYDAPNVKVLVGTRIRRRLDTKAIVELLRSLRIPNGTTAYIEQSLPFPGDGKQGWWSGGFNYGLWLGVLVASEISVVPVSSMRWKHEFKLSGNGSTKDDSRALACTLFPQLSSSLRRKKDHGRAE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_003516 |
|---|---|
| TK1151 ID | TkA01G348480 |
| OH-1004 ID | LXL04_003516 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_003516 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr01:81698237-81700524 (-) | ||||||
| Description | Similar to MOC1: Holliday junction resolvase MOC1, chloroplastic | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0006310 DNA recombination Biological Process GO:0009658 chloroplast organization Biological Process GO:0009507 chloroplast Cellular Component GO:0042644 chloroplast nucleoid Cellular Component GO:0000400 four-way junction DNA binding Molecular Function GO:0003677 DNA binding Molecular Function GO:0008821 crossover junction DNA endonuclease activity Molecular Function GO:0046872 metal ion binding Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT2G26840 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q8GWA2 | Arabidopsis thaliana | Holliday junction resolvase MOC1, chloroplastic | 56.938% | Swiss-Prot | strong database homology |