LXL04_003460 | RubberDandelionOmics

Gene overview

LXL04_003460

Reference: OH-1004 Chr: Chr01 Coordinates: 80009607-80011980 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

660 bp · LXL04_003460|LXL04_003460|OH1004|cDNA

ATGATGCACCTAAAAGAGACTGAGCTCTGCCTCGGATTACCCGGTGGCAGCGGCGGCAACGAGGCGGAGACCCTGAAAACCACCGGAAAACGAGGCTTCTCCGAAACCATCGATCTTAAGCTTAACCTTCAACCAAATGAGTCATTGGTCTCTAAGGACACGACCACCACAACAGCTCATGTCAAGCCACCAACCAAAGCACAAGTGGTCGGGTGGCCACCAGTGCGGAACTACCGGAAAAATGTAATGGCCCAGAAAAG...

CDS

Download CDS FASTA

660 bp · LXL04_003460|LXL04_003460|OH1004|CDS

ATGATGCACCTAAAAGAGACTGAGCTCTGCCTCGGATTACCCGGTGGCAGCGGCGGCAACGAGGCGGAGACCCTGAAAACCACCGGAAAACGAGGCTTCTCCGAAACCATCGATCTTAAGCTTAACCTTCAACCAAATGAGTCATTGGTCTCTAAGGACACGACCACCACAACAGCTCATGTCAAGCCACCAACCAAAGCACAAGTGGTCGGGTGGCCACCAGTGCGGAACTACCGGAAAAATGTAATGGCCCAGAAAAG...

Protein

Download Protein FASTA

219 aa · LXL04_003460|LXL04_003460|OH1004|PROTEIN

MMHLKETELCLGLPGGSGGNEAETLKTTGKRGFSETIDLKLNLQPNESLVSKDTTTTTAHVKPPTKAQVVGWPPVRNYRKNVMAQKSNTDDQPEKVATSTAAFVKVSMDGAPYLRKVDLNMYTSYQQLADALAKMFSSFTMGNYGRQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVASCKRLRIMKGSDAIGLAPRAMEKCKSRC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003460`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_003460

Location Chr01:80009607-80011980 (+)

Description Similar to IAA14: Auxin-responsive protein IAA14

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g14550`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`At3g23050`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`At1g04250`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`At3g04730`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003460 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009611 response to wounding Biological Process

GO:0009630 gravitropism Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0010102 lateral root morphogenesis Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:1900057 positive regulation of leaf senescence Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G04250

ath:AT3G04730

ath:AT3G23050

ath:AT4G14550

gmx:547965

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.900

Rank 1 · LXL04_003460 · OH-1004

Cytoplasm0.167

Rank 2 · LXL04_003460 · OH-1004

Cell membrane0.056

Rank 3 · LXL04_003460 · OH-1004

Endoplasmic reticulum0.031

Rank 4 · LXL04_003460 · OH-1004

Plastid0.015

Rank 5 · LXL04_003460 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02309.23AUX_IAA6-210 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003460	`PF02309.23`	AUX_IAA	6	210	6.7e-85	285.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q38832`	Arabidopsis thaliana	Auxin-responsive protein IAA14	72.687%	Swiss-Prot	strong database homology
`Q38825`	Arabidopsis thaliana	Auxin-responsive protein IAA7	67.647%	Swiss-Prot	strong database homology
`P93830`	Arabidopsis thaliana	Auxin-responsive protein IAA17	64.807%	Swiss-Prot	strong database homology
`O24407`	Arabidopsis thaliana	Auxin-responsive protein IAA16	63.559%	Swiss-Prot	strong database homology

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