LXL04_003320 | RubberDandelionOmics

Gene overview

LXL04_003320

Reference: OH-1004 Chr: Chr01 Coordinates: 74583330-74587076 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2154 bp · LXL04_003320|LXL04_003320|OH1004|cDNA

ATGGCTAATCTGGTCCCAGGAGTTTTGTTGAAGTTGCTTCAACATATGAACACGGATGTCAAAGTTGCGGGAGAGCACAGATCTTCTTTGTTACAAGTTGTGAGCATCGTTCCAGCTTTAGCCGGCGGTGAGCTCTTCCAAAATCAAGGGTTTTATCTCAAGGTATCTGATTCATCTCACGCCACATACGTGTCATTACCGGATGAAAATATCGATCTTATTTTGAGCGATAAGATCCAGTTAGGTCAGTATGTACACGT...

CDS

Download CDS FASTA

2154 bp · LXL04_003320|LXL04_003320|OH1004|CDS

ATGGCTAATCTGGTCCCAGGAGTTTTGTTGAAGTTGCTTCAACATATGAACACGGATGTCAAAGTTGCGGGAGAGCACAGATCTTCTTTGTTACAAGTTGTGAGCATCGTTCCAGCTTTAGCCGGCGGTGAGCTCTTCCAAAATCAAGGGTTTTATCTCAAGGTATCTGATTCATCTCACGCCACATACGTGTCATTACCGGATGAAAATATCGATCTTATTTTGAGCGATAAGATCCAGTTAGGTCAGTATGTACACGT...

Protein

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717 aa · LXL04_003320|LXL04_003320|OH1004|PROTEIN

MANLVPGVLLKLLQHMNTDVKVAGEHRSSLLQVVSIVPALAGGELFQNQGFYLKVSDSSHATYVSLPDENIDLILSDKIQLGQYVHVERLESATPVPILHGVRPVPGRHPCVGTPEDIVATHSLGFLNNNGSSTSTTSYKLPGNIKLPSKKDSNPTTVRSNGVIDSKKTSSTLARSKSQLSKLVLYTESRQSLSKVKPSNSRSIPSSPTSCYSLPTSFEKFSNGVKNQSKIKGFDKEIGKLNLGEKGSGVRGVSSSVKKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003320`
TK1151 ID	TkA01G374580
OH-1004 ID	LXL04_003320
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003320

Location Chr01:74583330-74587076 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08760`	Microtubule-associated protein required, redundantly with CORD1, for the formation of the pitted secondary cell wall of metaxylem vessels.	CORTICAL MICROTUBULE DISORDERING1 Is Required for Secondary Cell Wall Patterning in Xylem Vessels.2017 · DOI: 10.1105/tpc.17.00663
`At3g14170`	Microtubule-associated protein required, redundantly with CORD2, for the formation of the pitted secondary cell wall of metaxylem vessels.	CORTICAL MICROTUBULE DISORDERING1 Is Required for Secondary Cell Wall Patterning in Xylem Vessels.2017 · DOI: 10.1105/tpc.17.00663
`At4g13370`	Microtubule-associated protein controlling microtubule network organization.	No verified direct reference in this release
`At1g23790`	Microtubule-associated protein controlling microtubule network organization (By similarity).	No verified direct reference in this release
`At1g70340`	Microtubule-associated protein controlling microtubule network organization (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003320 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0048759 xylem vessel member cell differentiation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005874 microtubule Cellular Component

GO:0008017 microtubule binding Molecular Function

KEGG gene cross-reference

ath:AT1G08760

ath:AT4G13370

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.450

Rank 1 · LXL04_003320 · OH-1004

Cytoplasm0.435

Rank 2 · LXL04_003320 · OH-1004

Cell membrane0.242

Rank 3 · LXL04_003320 · OH-1004

Endoplasmic reticulum0.053

Rank 4 · LXL04_003320 · OH-1004

Golgi apparatus0.028

Rank 5 · LXL04_003320 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06075.19CORD_N4-120 aa

PF21647.3CORD_C391-714 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003320	`PF06075.19`	CORD_N	4	120	7.9e-57	191.0
LXL04_003320	`PF21647.3`	CORD_C	391	714	3.2e-108	362.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FRR2`	Arabidopsis thaliana	Protein CORTICAL MICROTUBULE DISORDERING 2	54.899%	Swiss-Prot	strong database homology
`Q6NKR8`	Arabidopsis thaliana	Protein CORTICAL MICROTUBULE DISORDERING 1	62.185%	Swiss-Prot	weak database homology
`Q9T0K8`	Arabidopsis thaliana	Protein CORTICAL MICROTUBULE DISORDERING 3	58.400%	Swiss-Prot	weak database homology
`Q9ZUB7`	Arabidopsis thaliana	Protein CORTICAL MICROTUBULE DISORDERING 4	58.197%	Swiss-Prot	weak database homology
`O64602`	Arabidopsis thaliana	Protein CORTICAL MICROTUBULE DISORDERING 5	54.545%	Swiss-Prot	weak database homology

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