LXL04_003310 | RubberDandelionOmics

Gene overview

LXL04_003310

Reference: OH-1004 Chr: Chr01 Coordinates: 74227807-74231628 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1188 bp · LXL04_003310|LXL04_003310|OH1004|cDNA

ATGGATATCTTCAGCAATGAAGACACAGAAAAGTATGATCGAACTGATGCACTAAAGCTGTTCGACGAAACGAAAGCAGGTGTAAAAGGATTAGTTGACGCTGGGGTTACGAGAATCCCGAGGATATTCATACGACCACATGATGAACTTGTTGAAGAACTGGATTGCAGTAAGGTAAACTTACAAATACCTGTTATCGATTTAACTGGCAGTGAAATAGGTGATCGGCGAAAGGAGATCGTTGAACAAATTCGCCAGGC...

CDS

Download CDS FASTA

1188 bp · LXL04_003310|LXL04_003310|OH1004|CDS

ATGGATATCTTCAGCAATGAAGACACAGAAAAGTATGATCGAACTGATGCACTAAAGCTGTTCGACGAAACGAAAGCAGGTGTAAAAGGATTAGTTGACGCTGGGGTTACGAGAATCCCGAGGATATTCATACGACCACATGATGAACTTGTTGAAGAACTGGATTGCAGTAAGGTAAACTTACAAATACCTGTTATCGATTTAACTGGCAGTGAAATAGGTGATCGGCGAAAGGAGATCGTTGAACAAATTCGCCAGGC...

Protein

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395 aa · LXL04_003310|LXL04_003310|OH1004|PROTEIN

MDIFSNEDTEKYDRTDALKLFDETKAGVKGLVDAGVTRIPRIFIRPHDELVEELDCSKVNLQIPVIDLTGSEIGDRRKEIVEQIRQASETWGFFQVINHEIPETLLDETIDCIRMFHEQESEIKMKIYSRDRMNRVRFDSNLDLYRSRAANWRDTLSLSMFISDDLDPDEVPAVCRHGVSFPFNDYVLMLRRPPSQIYNLQTKRETMLEYIKYVTKCGGTLLELLSEALGLRPTYLQDLECCHGRTFVCQYYPPCPEPEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003310`
TK1151 ID	TkAUNG043520
OH-1004 ID	LXL04_003310
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	86.300
Protein coverage (%)	TK1151 94.485 / OH-1004 72.152 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003310

Location Chr01:74227807-74231628 (-)

Description Similar to At1g06620: 1-aminocyclopropane-1-carboxylate oxidase homolog 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g06620`	1-aminocyclopropane-1-carboxylate oxidase homolog 1.	No verified direct reference in this release
`At5g59540`	1-aminocyclopropane-1-carboxylate oxidase homolog 12.	No verified direct reference in this release
`At5g43450`	1-aminocyclopropane-1-carboxylate oxidase homolog 10.	No verified direct reference in this release
`At5g43440`	1-aminocyclopropane-1-carboxylate oxidase homolog 9.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003310 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002238 response to molecule of fungal origin Biological Process

GO:0009620 response to fungus Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009805 coumarin biosynthetic process Biological Process

GO:0009820 alkaloid metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity Molecular Function

GO:0016629 12-oxophytodienoate reductase activity Molecular Function

GO:0031418 L-ascorbic acid binding Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ag:AAB97311

ath:AT1G06620

ath:AT5G43440

ath:AT5G43450

ath:AT5G59540

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.832

Rank 1 · LXL04_003310 · OH-1004

Nucleus0.302

Rank 2 · LXL04_003310 · OH-1004

Endoplasmic reticulum0.051

Rank 3 · LXL04_003310 · OH-1004

Peroxisome0.048

Rank 4 · LXL04_003310 · OH-1004

Mitochondrion0.041

Rank 5 · LXL04_003310 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14226.13DIOX_N63-163 aa

PF03171.272OG-FeII_Oxy247-341 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003310	`PF14226.13`	DIOX_N	63	163	5e-19	69.8
LXL04_003310	`PF03171.27`	2OG-FeII_Oxy	247	341	1.6e-32	112.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q84MB3`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate oxidase homolog 1	49.091%	Swiss-Prot	moderate database homology
`Q9LTH7`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate oxidase homolog 12	47.872%	Swiss-Prot	moderate database homology
`Q9LSW6`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate oxidase homolog 10	45.833%	Swiss-Prot	moderate database homology
`Q9LSW7`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate oxidase homolog 9	43.257%	Swiss-Prot	moderate database homology

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