LXL04_003300 | RubberDandelionOmics

Gene overview

LXL04_003300

Reference: OH-1004 Chr: Chr01 Coordinates: 74039858-74047523 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2130 bp · LXL04_003300|LXL04_003300|OH1004|cDNA

ATGGCAGCTGCCACCATGTCTCTCAACTCCTGCTCCGTTCAACAGCCGCGAGCCGCCGCCCAAAGACTCCACATGCTTCTCCACTTCACGGCCACCATAGCCATCTTATACTATAGGTTCACCAACCTAATCCACGGTGATGTACCCACCCTGCCATGGGCTCTCATGACAGCTTCCGAGCTTATCTTCTCCTTCATTTGGTTCTTAACGCAACCCTTCCGGTGGCGCCCGGTGGCTCGAACGGTCGCCCTTCAAAATCT...

CDS

Download CDS FASTA

2130 bp · LXL04_003300|LXL04_003300|OH1004|CDS

ATGGCAGCTGCCACCATGTCTCTCAACTCCTGCTCCGTTCAACAGCCGCGAGCCGCCGCCCAAAGACTCCACATGCTTCTCCACTTCACGGCCACCATAGCCATCTTATACTATAGGTTCACCAACCTAATCCACGGTGATGTACCCACCCTGCCATGGGCTCTCATGACAGCTTCCGAGCTTATCTTCTCCTTCATTTGGTTCTTAACGCAACCCTTCCGGTGGCGCCCGGTGGCTCGAACGGTCGCCCTTCAAAATCT...

Protein

Download Protein FASTA

709 aa · LXL04_003300|LXL04_003300|OH1004|PROTEIN

MAAATMSLNSCSVQQPRAAAQRLHMLLHFTATIAILYYRFTNLIHGDVPTLPWALMTASELIFSFIWFLTQPFRWRPVARTVALQNLPDDDQLPKVDVFICTADPSKEPTMEVMNTVLSAMGLDYPSEKLAVYLSDDGGAPSTLYAMKEACSFAKEWLPFCRKYGIKSRCPEWFFSSYGHDELLFRSQEFEEDEQKMKSAYEEFKENVERRTNDASAVNDRPPQIAIINDNRMSEKNNENKIQMPLLVYVSRERRPSLPH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003300`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003300

Location Chr01:74039858-74047523 (-)

Description Similar to CSLG1: Cellulose synthase-like protein G1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g24010`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release
`At4g24000`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release
`At4g23990`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0725300`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003300 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009833 plant-type primary cell wall biogenesis Biological Process

GO:0016104 triterpenoid biosynthetic process Biological Process

GO:0016135 saponin biosynthetic process Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

GO:0016759 cellulose synthase activity Molecular Function

GO:0016760 cellulose synthase (UDP-forming) activity Molecular Function

KEGG gene cross-reference

ath:AT4G23990

ath:AT4G24000

ath:AT4G24010

dosa:Os02g0725300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.476

Rank 1 · LXL04_003300 · OH-1004

Endoplasmic reticulum0.243

Rank 2 · LXL04_003300 · OH-1004

Golgi apparatus0.159

Rank 3 · LXL04_003300 · OH-1004

Lysosome / Vacuole0.121

Rank 4 · LXL04_003300 · OH-1004

Cytoplasm0.120

Rank 5 · LXL04_003300 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03552.21Cellulose_synt96-374 aa

PF03552.21Cellulose_synt383-705 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003300	`PF03552.21`	Cellulose_synt	96	374	1.3e-125	421.4
LXL04_003300	`PF03552.21`	Cellulose_synt	383	705	1.3e-125	421.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q570S7`	Arabidopsis thaliana	Cellulose synthase-like protein G1	34.936%	Swiss-Prot	moderate database homology
`Q8VYR4`	Arabidopsis thaliana	Cellulose synthase-like protein G2	34.438%	Swiss-Prot	moderate database homology
`Q0WVN5`	Arabidopsis thaliana	Cellulose synthase-like protein G3	34.438%	Swiss-Prot	moderate database homology
`Q0DXZ1`	Oryza sativa subsp. japonica	Cellulose synthase-like protein E2	34.874%	Swiss-Prot	moderate database homology

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