LXL04_003278 | RubberDandelionOmics

Gene overview

LXL04_003278

Reference: OH-1004 Chr: Chr01 Coordinates: 73075385-73084232 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4263 bp · LXL04_003278|LXL04_003278|OH1004|cDNA

atggctacccagaaaccacaacaaaacccagaaccatctgagcagttttccttccaggatgcagaggaatcatcctttcctgttctcagcatcaaaaacaataatctctacctaaacctaatcaccgttcttcaacccggagtcagattctttgattcttcattcaaatcaatttttgtttgtttgaagtaTTCAAAGATAGCCACTGCATTAACCCTATCCAAACCAGTTCCTATCACCATCCTATCTCGTGCATACGC...

CDS

Download CDS FASTA

4263 bp · LXL04_003278|LXL04_003278|OH1004|CDS

ATGGCTACCCAGAAACCACAACAAAACCCAGAACCATCTGAGCAGTTTTCCTTCCAGGATGCAGAGGAATCATCCTTTCCTGTTCTCAGCATCAAAAACAATAATCTCTACCTAAACCTAATCACCGTTCTTCAACCCGGAGTCAGATTCTTTGATTCTTCATTCAAATCAATTTTTGTTTGTTTGAAGTATTCAAAGATAGCCACTGCATTAACCCTATCCAAACCAGTTCCTATCACCATCCTATCTCGTGCATACGC...

Protein

Download Protein FASTA

1420 aa · LXL04_003278|LXL04_003278|OH1004|PROTEIN

MATQKPQQNPEPSEQFSFQDAEESSFPVLSIKNNNLYLNLITVLQPGVRFFDSSFKSIFVCLKYSKIATALTLSKPVPITILSRAYATARYDKSTETMHFELSATKTTKVTKHLFYKLLKLPVSTELIHPDSISNVDLINMCNQMGHEPLLETVSKMNKSRMPPRWNLLASIVLRCFAERTTGSDNASKLLLTLIYAIYTDQNIDIGHILWTQFCLSPNSSTRTTHISMARFWGIVVDGALNKFKDLKGDENVLMADASE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003278`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_003278

Location Chr01:73075385-73084232 (-)

Description Similar to ETFB: Electron transfer flavoprotein subunit beta, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g43430`	Heterodimeric electron transfer flavoprotein that accepts electrons from several mitochondrial dehydrogenases.	The mitochondrial electron transfer flavoprotein complex is essential for survival of Arabidopsis in extended darkness.2006 · DOI: 10.1111/j.1365-313x.2006.02826.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0182800`	Heterodimeric electron transfer flavoprotein that accepts electrons from several mitochondrial dehydrogenases.	No verified direct reference in this release
`UniProt: A2XQV4`	Heterodimeric electron transfer flavoprotein that accepts electrons from several mitochondrial dehydrogenases.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003278 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006552 L-leucine catabolic process Biological Process

GO:0009063 amino acid catabolic process Biological Process

GO:0015996 chlorophyll catabolic process Biological Process

GO:0022904 respiratory electron transport chain Biological Process

GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0045251 electron transfer flavoprotein complex Cellular Component

GO:0000166 nucleotide binding Molecular Function

GO:0009055 electron transfer activity Molecular Function

KEGG gene cross-reference

ath:AT5G43430

ddi:DDB_G0277991

dosa:Os04g0182800

rno:292845

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.679

Rank 1 · LXL04_003278 · OH-1004

Cytoplasm0.326

Rank 2 · LXL04_003278 · OH-1004

Mitochondrion0.050

Rank 3 · LXL04_003278 · OH-1004

Cell membrane0.033

Rank 4 · LXL04_003278 · OH-1004

Endoplasmic reticulum0.023

Rank 5 · LXL04_003278 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01012.28ETF1136-1318 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003278	`PF01012.28`	ETF	1136	1318	1e-38	133.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LSW8`	Arabidopsis thaliana	Electron transfer flavoprotein subunit beta, mitochondrial	79.518%	Swiss-Prot	weak database homology
`Q7F9U3`	Oryza sativa subsp. japonica	Electron transfer flavoprotein subunit beta, mitochondrial	75.889%	Swiss-Prot	weak database homology
`A2XQV4`	Oryza sativa subsp. indica	Electron transfer flavoprotein subunit beta, mitochondrial	75.099%	Swiss-Prot	weak database homology

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