Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1410 bp · LXL04_003263|LXL04_003263|OH1004|cDNA
ATGATGGTTCTCAGATTCCGCCTAATGCTCTATTCTGTTCTTTCCATTACCTTCATCGCTTGCGTACAAGCTCAAAATGTTGACGTAATTGACTCAACAATCAAAACAATGGAAGAATTCTCTGGATATCCACTTCATGAAATTGATTCCGTCCCTTCATTCTCGGTGGATTCTGCAAATCTTCAGAAACAGATTGATGAACTTTCAAGTTTCTCGGATTCACCAGCCCCTTCGGTAACAAGGATCTTATACAGTGAAAA...
1410 bp · LXL04_003263|LXL04_003263|OH1004|CDS
ATGATGGTTCTCAGATTCCGCCTAATGCTCTATTCTGTTCTTTCCATTACCTTCATCGCTTGCGTACAAGCTCAAAATGTTGACGTAATTGACTCAACAATCAAAACAATGGAAGAATTCTCTGGATATCCACTTCATGAAATTGATTCCGTCCCTTCATTCTCGGTGGATTCTGCAAATCTTCAGAAACAGATTGATGAACTTTCAAGTTTCTCGGATTCACCAGCCCCTTCGGTAACAAGGATCTTATACAGTGAAAA...
Protein
Download Protein FASTA469 aa · LXL04_003263|LXL04_003263|OH1004|PROTEIN
MMVLRFRLMLYSVLSITFIACVQAQNVDVIDSTIKTMEEFSGYPLHEIDSVPSFSVDSANLQKQIDELSSFSDSPAPSVTRILYSENDVLARRFIKNLMDKAGLSVKEDAVGNIFGRWEGSEPSLPAVSTGSHIDAIPYSGKYDGVVGVLGAIESINVLKRSGFKPKRSLEVIMFTSEEPTRYGISCLGSRLLAGSESLARSLKKTVVDNDNISFLDAAKSAGYAKTDDFSNVFLDEKSYSAFVELHIEQGPILENEGIS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_003263 |
|---|---|
| TK1151 ID | TkA01G380370 |
| OH-1004 ID | LXL04_003263 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_003263 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:72324616-72327441 (-) | ||||||||||||
| Description | Similar to UAH: Ureidoglycolate hydrolase | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0000256 allantoin catabolic process Biological Process GO:0006144 purine nucleobase metabolic process Biological Process GO:0006145 purine nucleobase catabolic process Biological Process GO:0008652 amino acid biosynthetic process Biological Process GO:0010136 ureide catabolic process Biological Process GO:0005783 endoplasmic reticulum Cellular Component GO:0009507 chloroplast Cellular Component GO:0009536 plastid Cellular Component GO:0004848 ureidoglycolate hydrolase activity Molecular Function GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines Molecular Function GO:0030145 manganese ion binding Molecular Function GO:0042802 identical protein binding Molecular Function | ||||||||||||
| KEGG gene cross-reference | ag:BAA01379 ath:AT5G43600 dosa:Os12g0597500 hin:HI_0588 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04389.23Peptidase_M28113-220 aaPF01546.34Peptidase_M20131-464 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_003263 | PF04389.23 | Peptidase_M28 | 113 | 220 | 1.7e-08 | 35.2 |
| LXL04_003263 | PF01546.34 | Peptidase_M20 | 131 | 464 | 1.2e-24 | 88.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.