Gene Card
Gene overview
cDNA / CDS / Protein Sequences
416 bp · LXL04_003198|LXL04_003198|OH1004|cDNA
ATGATTTCCAAACCGATCCCAGTGATACCTTCGAATCCAATTGCACTAACCCAAAGCAGTTTTCTTTCTACTCAATCAAAGATTCGCCATGCGTTTTCTGAGTTATGGGATTTAGAGGGAAAGTTTGGTTCCATAATTTCTGGAGCAATTCAATCTATGTTAAGTAAGAAAAAGTGTCCTTCAAACAGCAAAACTAAGCGTGGTTCTTTTTTGTTTTTGGGTGGAATGCAGACACTTACAAATGAACTGTGCAAAGAGAT...
393 bp · LXL04_003198|LXL04_003198|OH1004|CDS
ATGATTTCCAAACCGATCCCAGTGATACCTTCGAATCCAATTGCACTAACCCAAAGCAGTTTTCTTTCTACTCAATCAAAGATTCGCCATGCGTTTTCTGAGTTATGGGATTTAGAGGGAAAGTTTGGTTCCATAATTTCTGGAGCAATTCAATCTATGTTAAGTAAGAAAAAGTGTCCTTCAAACAGCAAAACTAAGCGTGGTTCTTTTTTGTTTTTGGGTGGAATGCAGACACTTACAAATGAACTGTGCAAAGAGAT...
Protein
Download Protein FASTA130 aa · LXL04_003198|LXL04_003198|OH1004|PROTEIN
MISKPIPVIPSNPIALTQSSFLSTQSKIRHAFSELWDLEGKFGSIISGAIQSMLSKKKCPSNSKTKRGSFLFLGGMQTLTNELCKEIGAGEVNLQSKVLEMSYFCDDNNSNFGNWSIFVVKIKTNSHLML
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_003198 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_003198 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr01:70676442-70677404 (+) | ||||||
| Description | Similar to PPXII: Protoporphyrinogen oxidase, mitochondrial | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0006779 porphyrin-containing compound biosynthetic process Biological Process GO:0006782 protoporphyrinogen IX biosynthetic process Biological Process GO:0006783 heme biosynthetic process Biological Process GO:0009793 embryo development ending in seed dormancy Biological Process GO:0015995 chlorophyll biosynthetic process Biological Process GO:0005739 mitochondrion Cellular Component GO:0005743 mitochondrial inner membrane Cellular Component GO:0009507 chloroplast Cellular Component GO:0009534 chloroplast thylakoid Cellular Component GO:0009536 plastid Cellular Component GO:0009706 chloroplast inner membrane Cellular Component GO:0009941 chloroplast envelope Cellular Component | ||||||
| KEGG gene cross-reference | ath:AT5G14220 nta:107815753 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q8S9J1 | Arabidopsis thaliana | Protoporphyrinogen oxidase 2, chloroplastic/mitochondrial | 42.574% | Swiss-Prot | moderate database homology |