LXL04_003135 | RubberDandelionOmics

Gene overview

LXL04_003135

Reference: OH-1004 Chr: Chr01 Coordinates: 68861091-68862101 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

474 bp · LXL04_003135|LXL04_003135|OH1004|cDNA

ATGGCTGGGTTGCTGGGTTGCCGGAGAGGGTGGTTCTTCCTCCTTGTCGGCCACCGCCGAGACCACCATCTAGCCGACgatttcttttcttctccttcaTGGTGCGATAACCTCCAAGCCACAACCGCTATTACATCAAAAGCTGCCATGACTGAACCGGAACCTATTGACTTGGAGTACTACAGAAAAGGACTTAGATCTCACATAGTTGATTCCTACAAAGATTATTATGACAACAAGACCACTCCTGAATACAAACC...

CDS

Download CDS FASTA

465 bp · LXL04_003135|LXL04_003135|OH1004|CDS

ATGGCTGGGTTGCTGGGTTGCCGGAGAGGGTGGTTCTTCCTCCTTGTCGGCCACCGCCGAGACCACCATCTAGCCGACGATTTCTTTTCTTCTCCTTCATGGTGCGATAACCTCCAAGCCACAACCGCTATTACATCAAAAGCTGCCATGACTGAACCGGAACCTATTGACTTGGAGTACTACAGAAAAGGACTTAGATCTCACATAGTTGATTCCTACAAAGATTATTATGACAACAAGACCACTCCTGAATACAAACC...

Protein

Download Protein FASTA

154 aa · LXL04_003135|LXL04_003135|OH1004|PROTEIN

MAGLLGCRRGWFFLLVGHRRDHHLADDFFSSPSWCDNLQATTAITSKAAMTEPEPIDLEYYRKGLRSHIVDSYKDYYDNKTTPEYKPKFDALMVELKEAEQKSLKESERLEKEIADVQDLKKKLSTMTADEYFEKHPELKKKFDDEIRNDYWGT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003135`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003135

Location Chr01:68861091-68862101 (-)

Description Similar to At3g52300: ATP synthase subunit d, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g52300`	Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_003135 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0015986 proton motive force-driven ATP synthesis Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:0045259 proton-transporting ATP synthase complex Cellular Component

GO:0003735 structural constituent of ribosome Molecular Function

KEGG gene cross-reference

ath:AT3G52300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.927

Rank 1 · LXL04_003135 · OH-1004

Cytoplasm0.088

Rank 2 · LXL04_003135 · OH-1004

Nucleus0.067

Rank 3 · LXL04_003135 · OH-1004

Cell membrane0.022

Rank 4 · LXL04_003135 · OH-1004

Extracellular0.015

Rank 5 · LXL04_003135 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FT52`	Arabidopsis thaliana	ATP synthase subunit d, mitochondrial	78.182%	Swiss-Prot	moderate database homology

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