LXL04_003037 | RubberDandelionOmics

Gene overview

LXL04_003037

Reference: OH-1004 Chr: Chr01 Coordinates: 65475441-65495510 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4128 bp · LXL04_003037|LXL04_003037|OH1004|cDNA

ATGGCAGTCGCCGGCACAGTGCACTGTGAACAGCTCTCGCAACAATCGCCGATGCTGCTGTGGCCGGGACTACGCGACAGGGAAGGGGATGCTGCCGTCGATCGCCGGAAGCTGTTGCCGGAACTGAAGTCGGCGCCTAGGGTTCGAGGATGGAGATGGCGAGAGAAACCAACCACTTTGCATTTCCAAGTTGTGAAGCACATCTTACGATATGTGAAAGGAATCATTGACTATGGACTCAACTATGGAAAAGGTCGTGA...

CDS

Download CDS FASTA

4128 bp · LXL04_003037|LXL04_003037|OH1004|CDS

ATGGCAGTCGCCGGCACAGTGCACTGTGAACAGCTCTCGCAACAATCGCCGATGCTGCTGTGGCCGGGACTACGCGACAGGGAAGGGGATGCTGCCGTCGATCGCCGGAAGCTGTTGCCGGAACTGAAGTCGGCGCCTAGGGTTCGAGGATGGAGATGGCGAGAGAAACCAACCACTTTGCATTTCCAAGTTGTGAAGCACATCTTACGATATGTGAAAGGAATCATTGACTATGGACTCAACTATGGAAAAGGTCGTGA...

Protein

Download Protein FASTA

1375 aa · LXL04_003037|LXL04_003037|OH1004|PROTEIN

MAVAGTVHCEQLSQQSPMLLWPGLRDREGDAAVDRRKLLPELKSAPRVRGWRWREKPTTLHFQVVKHILRYVKGIIDYGLNYGKGREVEDLVGFSDSDHGGDKVGGRSTGGMIFYLGRNAISWQSQKQKTIALSSCEAEFMAATATACQAIWLGNLVKELTGQNMMPITLYVDNKSAIALMKNPVFHGRSKHIDIRFHFIRECVERGQIIVEHVDSKDQRADILTKALAYVKHCEMRNLIGVTNLESSLSKSAANKNLPP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003037`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_003037`
Location	Chr01:65475441-65495510 (-)
Description	Similar to CYP716A52v2: Beta-amyrin 28-monooxygenase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_003037` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0016114 terpenoid biosynthetic process Biological Process GO:0016125 sterol metabolic process Biological Process GO:0016134 saponin metabolic process Biological Process GO:0019742 pentacyclic triterpenoid metabolic process Biological Process GO:0016020 membrane Cellular Component GO:0005506 iron ion binding Molecular Function GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen Molecular Function GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen Molecular Function GO:0020037 heme binding Molecular Function GO:0102373 beta-amyrin 28-monooxygenase activity Molecular Function
KEGG gene cross-reference	ag:AFO63032 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.562

Rank 1 · LXL04_003037 · OH-1004

Nucleus0.314

Rank 2 · LXL04_003037 · OH-1004

Endoplasmic reticulum0.066

Rank 3 · LXL04_003037 · OH-1004

Mitochondrion0.063

Rank 4 · LXL04_003037 · OH-1004

Peroxisome0.049

Rank 5 · LXL04_003037 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p450363-468 aa

PF13960.12DUF4218562-672 aa

PF13952.12DUF4216820-872 aa

PF00067.28p4501219-1346 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003037	`PF00067.28`	p450	363	468	9.5e-33	114.4
LXL04_003037	`PF13960.12`	DUF4218	562	672	2.1e-45	153.9
LXL04_003037	`PF13952.12`	DUF4216	820	872	8.7e-10	39.7
LXL04_003037	`PF00067.28`	p450	1219	1346	9.5e-33	114.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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