LXL04_002981 | RubberDandelionOmics

Gene overview

LXL04_002981

Reference: OH-1004 Chr: Chr01 Coordinates: 64017983-64019637 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

966 bp · LXL04_002981|LXL04_002981|OH1004|cDNA

ATGTCTTCAAACGATGCACCAACTTCTTTGGAGCCGCAAGATCCAATTCCAATCATTGACTACTCCTTACTCACTTCTGGTACTGTTGACGAGCATTCAAAAGTCGTCCAAGATATTGGGAAAGCCTGTGAAGATTGGGGCTGCTTCATGTTGGTAAATCACGGTATCCCATACACTTTGATCAAAGAGATGATGGACGGGTCGAATGAGTTTTTCAATATGACGAAAGACGAAAAGCTTGAATTTGAAGCTCATGGTGT...

CDS

Download CDS FASTA

966 bp · LXL04_002981|LXL04_002981|OH1004|CDS

ATGTCTTCAAACGATGCACCAACTTCTTTGGAGCCGCAAGATCCAATTCCAATCATTGACTACTCCTTACTCACTTCTGGTACTGTTGACGAGCATTCAAAAGTCGTCCAAGATATTGGGAAAGCCTGTGAAGATTGGGGCTGCTTCATGTTGGTAAATCACGGTATCCCATACACTTTGATCAAAGAGATGATGGACGGGTCGAATGAGTTTTTCAATATGACGAAAGACGAAAAGCTTGAATTTGAAGCTCATGGTGT...

Protein

Download Protein FASTA

321 aa · LXL04_002981|LXL04_002981|OH1004|PROTEIN

MSSNDAPTSLEPQDPIPIIDYSLLTSGTVDEHSKVVQDIGKACEDWGCFMLVNHGIPYTLIKEMMDGSNEFFNMTKDEKLEFEAHGVLDPIRCSTGFIPNNNNKDLLWREYLRLIVHPDFHCPHKPLGFSELASVYVKNTRTVAMELVKGVSESLGFEASYMHDQLNLDSGFQLLAINYYPSLMEFDGARGLMPHTDHGLLTLLYENGVPGLEVIRKGKWIGMSDVSNAFAVLNSDHMEIFSNGKYKSKLHRTVVKDERT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002981`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002981

Location Chr01:64017983-64019637 (+)

Description Similar to 2ODD19: 2-oxoglutarate-dependent dioxygenase 19

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g10500`	Converts salicylic acid (SA) to both 2,3-dihydroxybenzoic acid (2,3-DHBA) and 2,5-DHBA in vitro but only 2,3-DHBA in vivo.	DOWNY MILDEW RESISTANT 6 and DMR6-LIKE OXYGENASE 1 are partially redundant but distinct suppressors of immunity in Arabidopsis.2015 · DOI: 10.1111/tpj.12719
`At4g10490`	Converts salicylic acid (SA) to 2,3-dihydroxybenzoic acid (2,3-DHBA) (By similarity).	DOWNY MILDEW RESISTANT 6 and DMR6-LIKE OXYGENASE 1 are partially redundant but distinct suppressors of immunity in Arabidopsis.2015 · DOI: 10.1111/tpj.12719

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0480200`	Involved in melatonin degradation.	No verified direct reference in this release
`Os10g0536400`	Catalyzes the 3-beta-hydroxylation of 2S-flavanones to 2R,3R- dihydroflavonols which are intermediates in the biosynthesis of flavonols, anthocyanidins, catechins and proanthocyanidins in plants.	Flavanone 3beta-hydroxylases from rice: key enzymes for favonol and anthocyanin biosynthesis.2008 · DOI: 10.1016/s1016-8478(23)17587-x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002981 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0002239 response to oomycetes Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009620 response to fungus Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009813 flavonoid biosynthetic process Biological Process

GO:0010150 leaf senescence Biological Process

GO:0046244 salicylic acid catabolic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016706 2-oxoglutarate-dependent dioxygenase activity Molecular Function

GO:0031418 L-ascorbic acid binding Molecular Function

KEGG gene cross-reference

ath:AT4G10490

ath:AT4G10500

dosa:Os08g0480200

dosa:Os10g0536400

osa:4345848

osa:4349238

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.814

Rank 1 · LXL04_002981 · OH-1004

Nucleus0.299

Rank 2 · LXL04_002981 · OH-1004

Endoplasmic reticulum0.049

Rank 3 · LXL04_002981 · OH-1004

Peroxisome0.048

Rank 4 · LXL04_002981 · OH-1004

Mitochondrion0.039

Rank 5 · LXL04_002981 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14226.13DIOX_N16-119 aa

PF03171.272OG-FeII_Oxy173-264 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002981	`PF14226.13`	DIOX_N	16	119	1.7e-21	77.8
LXL04_002981	`PF03171.27`	2OG-FeII_Oxy	173	264	9.3e-19	68.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZSA8`	Arabidopsis thaliana	Protein DMR6-LIKE OXYGENASE 1	33.553%	Swiss-Prot	moderate database homology
`Q9ZSA7`	Arabidopsis thaliana	Protein DMR6-LIKE OXYGENASE 2	33.544%	Swiss-Prot	moderate database homology
`Q6Z244`	Oryza sativa subsp. japonica	2-oxoglutarate-dependent dioxygenase 19	40.127%	Swiss-Prot	moderate database homology
`Q8W2X5`	Oryza sativa subsp. japonica	Flavanone 3-dioxygenase 2	33.119%	Swiss-Prot	moderate database homology

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