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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_002862
Reference: OH-1004 Chr: Chr01 Coordinates: 59912260-59915819 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1917 bp · LXL04_002862|LXL04_002862|OH1004|cDNA

ATGATGATCATGCTTCAAAGCCTCAGATTTTGCTTCCTCTGTTTGTTGCTTTTTGCTccttctctttctctctcttatgAAGCTCGTAATCCCGAAGTTGTAGCTTTAATTTTGATTAGAAATGGTCTGAACGATCCCCATGGAGCTTTTAACAATTGGGATGAAGACTCCGTGGACCCTTGTAGCTGGGCTATGATAACTTGTTCCCCTGATAATCTCGTCACCGGCATTGGAGCTCCAAGCCAAGGTTTATCAGGAAC...

CDS

Download CDS FASTA

1917 bp · LXL04_002862|LXL04_002862|OH1004|CDS

ATGATGATCATGCTTCAAAGCCTCAGATTTTGCTTCCTCTGTTTGTTGCTTTTTGCTCCTTCTCTTTCTCTCTCTTATGAAGCTCGTAATCCCGAAGTTGTAGCTTTAATTTTGATTAGAAATGGTCTGAACGATCCCCATGGAGCTTTTAACAATTGGGATGAAGACTCCGTGGACCCTTGTAGCTGGGCTATGATAACTTGTTCCCCTGATAATCTCGTCACCGGCATTGGAGCTCCAAGCCAAGGTTTATCAGGAAC...

Protein

Download Protein FASTA

638 aa · LXL04_002862|LXL04_002862|OH1004|PROTEIN

MMIMLQSLRFCFLCLLLFAPSLSLSYEARNPEVVALILIRNGLNDPHGAFNNWDEDSVDPCSWAMITCSPDNLVTGIGAPSQGLSGTLQGVIANLTNLREVLLQNNNISGQIPAGIGRLPKLQTVDLSNNKLTGHVPESLSLLNGLQYLRLNNNSLSGSIPLSLASVPHLALIDLSYNNLSGPVPKFSARTFNIVGNPLICGSHANEGCYGSTLPEPLSFEINSSSGKNKSKRVAIALGISLSCLVLLILSLGVLLWKRS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_002862
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_002862
LocationChr01:59912260-59915819 (+)
DescriptionSimilar to At2g23950: Probable LRR receptor-like serine/threonine-protein kinase At2g23950
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g23950 May act as a receptor kinase regulating meristem homeostasis and protophloem differentiation.
CLERK is a novel receptor kinase required for sensing of root-active CLE peptides in Arabidopsis .2018 · DOI: 10.1242/dev.162354
A CLE-BAM-CIK signalling module controls root protophloem differentiation in Arabidopsis.2022 · DOI: 10.1111/nph.17791
At4g30520 May act as a receptor kinase regulating meristem homeostasis and protophloem differentiation.
CLERK is a novel receptor kinase required for sensing of root-active CLE peptides in Arabidopsis .2018 · DOI: 10.1242/dev.162354
At5g16000 May act as a receptor kinase regulating meristem homeostasis and protophloem differentiation.
Regulated nuclear trafficking of rpL10A mediated by NIK1 represents a defense strategy of plant cells against virus.2008 · DOI: 10.1371/journal.ppat.1000247
NIK1-mediated translation suppression functions as a plant antiviral immunity mechanism.2015 · DOI: 10.1038/nature14171
CLERK is a novel receptor kinase required for sensing of root-active CLE peptides in Arabidopsis .2018 · DOI: 10.1242/dev.162354
At3g25560 Receptor kinase acting, redundantly with other CIKs (e.g. CIK1, CIK2, CIK3, CIK5 and CIK6), as a coreceptor of CLV1, CLV2/CRN and RPK2, and required for CLAVATA-family peptides (e.g. CLV3, CLE25, CLE26 and CLE45) signaling through phosphorylation; this signaling regulates protophloem differentiation and the maintenance of shoot apical meristem (SAM) and root apical meristem (RAM) homeostasis, and acts down-stream of BRX and OPS. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0274500 LRR receptor kinase that may be involved in defense response. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002862 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0007639 homeostasis of number of meristem cells Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0010088 phloem development Biological Process
GO:0010150 leaf senescence Biological Process
GO:0034504 protein localization to nucleus Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0040015 negative regulation of multicellular organism growth Biological Process
GO:0048638 regulation of developmental growth Biological Process
GO:0048653 anther development Biological Process
GO:0051607 defense response to virus Biological Process
KEGG gene cross-reference
ath:AT2G23950
ath:AT3G25560
ath:AT4G30520
ath:AT5G16000
dosa:Os06g0274500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.878
Rank 1 · LXL04_002862 · OH-1004
Endoplasmic reticulum0.077
Rank 2 · LXL04_002862 · OH-1004
Cytoplasm0.073
Rank 3 · LXL04_002862 · OH-1004
Nucleus0.050
Rank 4 · LXL04_002862 · OH-1004
Lysosome / Vacuole0.022
Rank 5 · LXL04_002862 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_230-69 aa
PF23598.2LRR_1492-156 aa
PF13855.13LRR_896-156 aa
PF12799.14LRR_496-133 aa
PF13855.13LRR_8120-180 aa
PF12799.14LRR_4146-182 aa
PF00069.32Pkinase301-566 aa
PF07714.24PK_Tyr_Ser-Thr303-568 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_002862PF08263.18LRRNT_230692e-1247.8
LXL04_002862PF23598.2LRR_14921561.2e-0628.3
LXL04_002862PF13855.13LRR_8961563.1e-1350.0
LXL04_002862PF12799.14LRR_4961332.2e-1144.3
LXL04_002862PF13855.13LRR_81201803.1e-1350.0
LXL04_002862PF12799.14LRR_41461822.2e-1144.3
LXL04_002862PF00069.32Pkinase3015668.4e-41140.8
LXL04_002862PF07714.24PK_Tyr_Ser-Thr3035687.2e-42144.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WVM4Arabidopsis thalianaProtein CLAVATA3 INSENSITIVE RECEPTOR KINASE 267.712%Swiss-Protstrong database homology
Q8VYT3Arabidopsis thalianaProtein CLAVATA3 INSENSITIVE RECEPTOR KINASE 368.125%Swiss-Protstrong database homology
Q9LFS4Arabidopsis thalianaProtein CLAVATA3 INSENSITIVE RECEPTOR KINASE 561.728%Swiss-Protstrong database homology
Q8RY65Arabidopsis thalianaProtein CLAVATA3 INSENSITIVE RECEPTOR KINASE 662.480%Swiss-Protstrong database homology
Q9FP13Oryza sativa subsp. japonicaLRR receptor kinase SERL265.419%Swiss-Protstrong database homology

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