LXL04_002792 | RubberDandelionOmics

Gene overview

LXL04_002792

Reference: OH-1004 Chr: Chr01 Coordinates: 58375468-58377912 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1910 bp · LXL04_002792|LXL04_002792|OH1004|cDNA

ATCCTGTTTCTCTCTCTAATATCTTTAAAATCATTCTTATTTCTTTCTGGGGTGGTTTTGTTCGTCAACAAGGTGGTCAAACATATGCGAAAAATCCAAACTTTCTGAATCTTGTGGGTGTATTGAATCTCGTTTGATCTCTTTCATCATCTGGGATTCTTTGTGTTTCAAATTATAGAGAAAACACGATGACTGTAGAAGAAATTAGAGGGTCTAGTAACGAAATTGACAGATTTCCCATTGGGATGAGAGTTCTTGCT...

CDS

Download CDS FASTA

1722 bp · LXL04_002792|LXL04_002792|OH1004|CDS

ATGACTGTAGAAGAAATTAGAGGGTCTAGTAACGAAATTGACAGATTTCCCATTGGGATGAGAGTTCTTGCTGTCGATGACGATCCGACCTGTTTAAAGTTATTAGATGGGCTTTTAAGGAAATGCCAATATCAAGTTACAACCACAAATCAAGCTGTAACCGCATTGAAGATGTTAAGGGAAAATCGAAACCGGTTTGACCTTGTGATCAGTGATGTTCATATGCCGGACATGGATGGTTTCAAGCTCCTTGAACTCGT...

Protein

Download Protein FASTA

573 aa · LXL04_002792|LXL04_002792|OH1004|PROTEIN

MTVEEIRGSSNEIDRFPIGMRVLAVDDDPTCLKLLDGLLRKCQYQVTTTNQAVTALKMLRENRNRFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNSDPKLVMKGITHGACDYLVKPVRLEELRNIWQHVIRKKVETKSQSRSDNQERQNHGGEGGQEAGSGDLNGKLNRKRKDDDDDADDNANEDDDPSSQKKPRVVWSIDLHRKFVAAVNQLGIEKAVPKRILDLMNVEGLTRENVASHLQKYRLYLKRISQQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002792`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_002792

Location Chr01:58375468-58377912 (+)

Description Similar to RR22: Two-component response regulator ORR22

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0183100`	Transcriptional activator that binds specific DNA sequence.	No verified direct reference in this release
`UniProt: B8B3I4`	Transcriptional activator that binds specific DNA sequence.	No verified direct reference in this release
`UniProt: A2X1N2`	Transcriptional activator that binds specific DNA sequence.	No verified direct reference in this release
`Os02g0182100`	Transcriptional activator that binds specific DNA sequence.	No verified direct reference in this release
`Os02g0796500`	Transcriptional activator that binds specific DNA sequence.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002792 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000160 phosphorelay signal transduction system Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

dosa:Os02g0182100

dosa:Os02g0796500

dosa:Os06g0183100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.977

Rank 1 · LXL04_002792 · OH-1004

Cytoplasm0.071

Rank 2 · LXL04_002792 · OH-1004

Cell membrane0.026

Rank 3 · LXL04_002792 · OH-1004

Endoplasmic reticulum0.019

Rank 4 · LXL04_002792 · OH-1004

Plastid0.013

Rank 5 · LXL04_002792 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00072.31Response_reg22-131 aa

PF00249.38Myb_DNA-binding201-251 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002792	`PF00072.31`	Response_reg	22	131	1.1e-24	87.5
LXL04_002792	`PF00249.38`	Myb_DNA-binding	201	251	4.5e-07	30.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q5SML5`	Oryza sativa subsp. japonica	Two-component response regulator ORR22	57.983%	Swiss-Prot	moderate database homology
`B8B3I4`	Oryza sativa subsp. indica	Two-component response regulator ORR22	57.983%	Swiss-Prot	moderate database homology
`A2X1N2`	Oryza sativa subsp. indica	Two-component response regulator ORR24	60.182%	Swiss-Prot	moderate database homology
`Q6H805`	Oryza sativa subsp. japonica	Two-component response regulator ORR24	60.182%	Swiss-Prot	moderate database homology
`Q6K8X6`	Oryza sativa subsp. japonica	Two-component response regulator ORR23	55.556%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card