Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2259 bp · LXL04_002731|LXL04_002731|OH1004|cDNA
ATGGACTCGTCATCAGTGACTCCGGCAAACAACAACAGTAGGGTGGATGCATCGTTAGTGTCTGACACCGACTTGATTTCTGTTACTCAAACGCTAGCGAAGGAGGCGTATGTGCTTTTTCAGTTGGGGAAGTATGTTGAATGCCTGAAGGTCTTGAATCAGATCTTGGAAAAGAAAGCCGATGATCCGAAGGTTCTTCATAACATGGCTATAGTGGAGAACTTTCAAGATGGATTTTCAAATCCAAAGAGATTCTTAGA...
2259 bp · LXL04_002731|LXL04_002731|OH1004|CDS
ATGGACTCGTCATCAGTGACTCCGGCAAACAACAACAGTAGGGTGGATGCATCGTTAGTGTCTGACACCGACTTGATTTCTGTTACTCAAACGCTAGCGAAGGAGGCGTATGTGCTTTTTCAGTTGGGGAAGTATGTTGAATGCCTGAAGGTCTTGAATCAGATCTTGGAAAAGAAAGCCGATGATCCGAAGGTTCTTCATAACATGGCTATAGTGGAGAACTTTCAAGATGGATTTTCAAATCCAAAGAGATTCTTAGA...
Protein
Download Protein FASTA752 aa · LXL04_002731|LXL04_002731|OH1004|PROTEIN
MDSSSVTPANNNSRVDASLVSDTDLISVTQTLAKEAYVLFQLGKYVECLKVLNQILEKKADDPKVLHNMAIVENFQDGFSNPKRFLEALDNLKKRSEKLAHSSGENAEALNNRIKAVGNKGNNAVSADYFDVSVIMFNISVILYHLHEYEKSFSILERLYQNIEPIDERVARHVCLLLLDVSLVCHHASRAADVINYLERVGGNSLGSQGDSGTFIQQPNLVTKSTSAPTNVLISSDLDNNNNNGPESPLSRTLSEETLY...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_002731 |
|---|---|
| TK1151 ID | TkA04G365530 |
| OH-1004 ID | LXL04_002731 |
| Relationship / confidence | Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable |
| Protein identity (%) | 99.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_002731 |
|---|---|
| Location | Chr01:56410555-56415844 (+) |
| Description | Similar to Cnot10: CCR4-NOT transcription complex subunit 10 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006402 mRNA catabolic process Biological Process GO:0017148 negative regulation of translation Biological Process GO:0031047 regulatory ncRNA-mediated gene silencing Biological Process GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0016020 membrane Cellular Component GO:0030014 CCR4-NOT complex Cellular Component |
| KEGG gene cross-reference | bta:540938 gga:420669 hsa:25904 mmu:78893 rno:316034 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF07719.24TPR_2361-388 aaPF00515.35TPR_1362-388 aaPF27626.2CNOT10_TPR560-733 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_002731 | PF07719.24 | TPR_2 | 361 | 388 | 8e-14 | 51.3 |
| LXL04_002731 | PF00515.35 | TPR_1 | 362 | 388 | 8.7e-12 | 45.0 |
| LXL04_002731 | PF27626.2 | CNOT10_TPR | 560 | 733 | 1.3e-56 | 191.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.