LXL04_002644 | RubberDandelionOmics

Gene overview

LXL04_002644

Reference: OH-1004 Chr: Chr01 Coordinates: 53661846-53665662 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1587 bp · LXL04_002644|LXL04_002644|OH1004|cDNA

atGAAAGGAGAGATGGTGTTGGTAACATATTTGATAGTATTAGTGATCATTGTGAAGGTCTTTATGGTGTTATGGTGGAAACCAAAGAAGATTGAAAAGCATTTTGCTGAACAAGGCATAAAGGGACCTCCATATTGCTTACTTATTGGAAATGCAAAAGAGATTGTGAGTTTAATGGTGAAAGCTGGTTCACAACCTATGCCTATGCCTTTCTCTCACGATATTCTCCCAAGAGTCCTCCCTTTCTACCACCATTGGAA...

CDS

Download CDS FASTA

1587 bp · LXL04_002644|LXL04_002644|OH1004|CDS

ATGAAAGGAGAGATGGTGTTGGTAACATATTTGATAGTATTAGTGATCATTGTGAAGGTCTTTATGGTGTTATGGTGGAAACCAAAGAAGATTGAAAAGCATTTTGCTGAACAAGGCATAAAGGGACCTCCATATTGCTTACTTATTGGAAATGCAAAAGAGATTGTGAGTTTAATGGTGAAAGCTGGTTCACAACCTATGCCTATGCCTTTCTCTCACGATATTCTCCCAAGAGTCCTCCCTTTCTACCACCATTGGAA...

Protein

Download Protein FASTA

528 aa · LXL04_002644|LXL04_002644|OH1004|PROTEIN

MKGEMVLVTYLIVLVIIVKVFMVLWWKPKKIEKHFAEQGIKGPPYCLLIGNAKEIVSLMVKAGSQPMPMPFSHDILPRVLPFYHHWKKIYGPTFLIWFGPMARLTIVDPDIVREVFSSKSELFEKNEAHPLIKQLEGDGLLSLKGEKWALHRKIITPTFHMDNLKLLVPIATSSVVKMLDIWLDMSDSGEVEIEVSQWYQNLTKETMTRTAFGNMYYEDGKHIFQLQTRQTILTSEAFQKIFIPGYRFLPTKRNRESWKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002644`
TK1151 ID	TkA01G433580
OH-1004 ID	LXL04_002644
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 98.684 / OH-1004 71.023 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002644

Location Chr01:53661846-53665662 (+)

Description Similar to CYP734A1: Cytochrome P450 734A1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26710`	Cytochrome P450 involved in brassinosteroids (BRs) inactivation and regulation of BRs homeostasis.	BAS1 and SOB7 act redundantly to modulate Arabidopsis photomorphogenesis via unique brassinosteroid inactivation mechanisms.2005 · DOI: 10.1111/j.1365-313x.2005.02358.x Arabidopsis CYP72C1 is an atypical cytochrome P450 that inactivates brassinosteroids.2010 · DOI: 10.1007/s11103-010-9663-y

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0388000`	Cytochrome P450 involved in brassinosteroids (BRs) inactivation and regulation of BRs homeostasis.	No verified direct reference in this release
`Os02g0204700`	Cytochrome P450 involved in brassinosteroids (BRs) inactivation and regulation of BRs homeostasis.	No verified direct reference in this release
`Os06g0600400`	Cytochrome P450 involved in brassinosteroids (BRs) inactivation and regulation of BRs homeostasis.	No verified direct reference in this release
`Os07g0647200`	Cytochrome P450 probably involved in brassinosteroids (BRs) inactivation and regulation of BRs homeostasis.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002644 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009741 response to brassinosteroid Biological Process

GO:0010268 brassinosteroid homeostasis Biological Process

GO:0016131 brassinosteroid metabolic process Biological Process

GO:0016020 membrane Cellular Component

GO:0004497 monooxygenase activity Molecular Function

GO:0005506 iron ion binding Molecular Function

GO:0008395 steroid hydroxylase activity Molecular Function

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Molecular Function

GO:0020037 heme binding Molecular Function

KEGG gene cross-reference

ath:AT2G26710

dosa:Os01g0388000

dosa:Os02g0204700

dosa:Os06g0600400

dosa:Os07g0647200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.854

Rank 1 · LXL04_002644 · OH-1004

Cytoplasm0.050

Rank 2 · LXL04_002644 · OH-1004

Plastid0.044

Rank 3 · LXL04_002644 · OH-1004

Cell membrane0.040

Rank 4 · LXL04_002644 · OH-1004

Mitochondrion0.040

Rank 5 · LXL04_002644 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p45083-497 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002644	`PF00067.28`	p450	83	497	9.1e-87	292.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O48786`	Arabidopsis thaliana	Cytochrome P450 734A1	66.279%	Swiss-Prot	strong database homology
`B9X287`	Oryza sativa subsp. japonica	Cytochrome P450 734A6	59.961%	Swiss-Prot	strong database homology
`Q6Z6D6`	Oryza sativa subsp. japonica	Cytochrome P450 734A2	53.743%	Swiss-Prot	strong database homology
`Q69XM6`	Oryza sativa subsp. japonica	Cytochrome P450 734A4	54.702%	Swiss-Prot	strong database homology
`Q8LIF2`	Oryza sativa subsp. japonica	Cytochrome P450 734A5	49.900%	Swiss-Prot	moderate database homology

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