LXL04_002639 | RubberDandelionOmics

Gene overview

LXL04_002639

Reference: OH-1004 Chr: Chr01 Coordinates: 53559409-53561289 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1158 bp · LXL04_002639|LXL04_002639|OH1004|cDNA

ATGGCAACCGCACATCTCTCCAACACCATTATCCGGCCAATTTCCGTCAATTATGTTGATCAACGGAGACTTAAACCATCGGAAAACTCCATTGTCTTCATCAAACAGTCTAGAAACAGAAGCCTAGTCGATAATAGAACTACTAGAACTCGCATTAGACAGAGTTTAGTTGAACAAATCCCGCCAAAATCTTCGAAAGTCGACGTTGAACGGTTAGTGGATTTTCTGTACGAGGACCTTCCGCATCTCTTCGATGATCA...

CDS

Download CDS FASTA

1158 bp · LXL04_002639|LXL04_002639|OH1004|CDS

ATGGCAACCGCACATCTCTCCAACACCATTATCCGGCCAATTTCCGTCAATTATGTTGATCAACGGAGACTTAAACCATCGGAAAACTCCATTGTCTTCATCAAACAGTCTAGAAACAGAAGCCTAGTCGATAATAGAACTACTAGAACTCGCATTAGACAGAGTTTAGTTGAACAAATCCCGCCAAAATCTTCGAAAGTCGACGTTGAACGGTTAGTGGATTTTCTGTACGAGGACCTTCCGCATCTCTTCGATGATCA...

Protein

Download Protein FASTA

385 aa · LXL04_002639|LXL04_002639|OH1004|PROTEIN

MATAHLSNTIIRPISVNYVDQRRLKPSENSIVFIKQSRNRSLVDNRTTRTRIRQSLVEQIPPKSSKVDVERLVDFLYEDLPHLFDDQGIDRTAYDEQVKFRDPITKHDSISGYLFNIAMLKLVFSPNFQLHWARQTGPYEVTTRWTMEMTFSLLPWKPLLVFTGTSVMGINPENGKFCSHVDYWDSIKNNDYFSSEGLVDLVKQLRIYKTPDLETPKYQILKRTATYEVRKYSPFIIVETQSDKLAGNTGFNDVAGYIFG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002639`
TK1151 ID	TkA01G433800
OH-1004 ID	LXL04_002639
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_002639

Location Chr01:53559409-53561289 (+)

Description Similar to At3g10130: Heme-binding-like protein At3g10130, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10130`	Heme-binding-like protein At3g10130, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002639 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0010287 plastoglobule Cellular Component

GO:0020037 heme binding Molecular Function

KEGG gene cross-reference

ath:AT3G10130

mmu:56016

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.978

Rank 1 · LXL04_002639 · OH-1004

Mitochondrion0.031

Rank 2 · LXL04_002639 · OH-1004

Cytoplasm0.017

Rank 3 · LXL04_002639 · OH-1004

Cell membrane0.014

Rank 4 · LXL04_002639 · OH-1004

Nucleus0.013

Rank 5 · LXL04_002639 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10184.16DUF235871-180 aa

PF04832.18SOUL213-377 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002639	`PF10184.16`	DUF2358	71	180	4.7e-27	95.2
LXL04_002639	`PF04832.18`	SOUL	213	377	1.6e-40	139.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SR77`	Arabidopsis thaliana	Heme-binding-like protein At3g10130, chloroplastic	35.025%	Swiss-Prot	weak database homology

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