Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2376 bp · LXL04_002521|LXL04_002521|OH1004|cDNA
ATGGCACTCAAACTCCTTATCTTCCTGGTCCCTTTGATAATAGCATCTTCCGCTCTAGCCGAGATGAAGATCTATTGCACACCAGAAGATGAAGTCGCTCCAAAGAAGAAAGATGGTGATAAGaaagattgtccaaatccgAAAGATGGGGGCTGCGGTAAGAAAGACGATGGCGGCGGGAACGAGTGCCCAAATCAGAAAGGTGATGGTGGTGGCGATTGTGCTCCTAAAGGCGGCGGCGATGGTAAAGACTGCCCCGA...
2376 bp · LXL04_002521|LXL04_002521|OH1004|CDS
ATGGCACTCAAACTCCTTATCTTCCTGGTCCCTTTGATAATAGCATCTTCCGCTCTAGCCGAGATGAAGATCTATTGCACACCAGAAGATGAAGTCGCTCCAAAGAAGAAAGATGGTGATAAGAAAGATTGTCCAAATCCGAAAGATGGGGGCTGCGGTAAGAAAGACGATGGCGGCGGGAACGAGTGCCCAAATCAGAAAGGTGATGGTGGTGGCGATTGTGCTCCTAAAGGCGGCGGCGATGGTAAAGACTGCCCCGA...
Protein
Download Protein FASTA791 aa · LXL04_002521|LXL04_002521|OH1004|PROTEIN
MALKLLIFLVPLIIASSALAEMKIYCTPEDEVAPKKKDGDKKDCPNPKDGGCGKKDDGGGNECPNQKGDGGGDCAPKGGGDGKDCPDPKGADGGGCSPKGGGDGKACPDPKGADGGGGCCPDPKGEDGGGGCSPDPKGADGGGGCCPDPKGEGGGGGCCPDPKGADGGSGCCPDPKGEGGGGGCCPDPKGADGGGCCPDPKGTDGGGGCCPDPKGTDGGGGCCPDPKGADGGGGCCPDPKGADGGGGCCPDPKGTDGGGG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_002521 |
|---|---|
| TK1151 ID | TkA01G459240 |
| OH-1004 ID | LXL04_002521 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 98.100 |
| Protein coverage (%) | TK1151 9.012 / OH-1004 6.574Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_002521 |
|---|---|
| Location | Chr01:50731824-50734199 (+) |
| Description | Protein of unknown function |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0007040 lysosome organization Biological Process GO:0007041 lysosomal transport Biological Process GO:0007042 lysosomal lumen acidification Biological Process GO:0008284 positive regulation of cell population proliferation Biological Process GO:0009642 response to light intensity Biological Process GO:0010595 positive regulation of endothelial cell migration Biological Process GO:0030198 extracellular matrix organization Biological Process GO:0030335 positive regulation of cell migration Biological Process GO:0032355 response to estradiol Biological Process GO:0035988 chondrocyte proliferation Biological Process GO:0045824 negative regulation of innate immune response Biological Process GO:0050679 positive regulation of epithelial cell proliferation Biological Process |
| KEGG gene cross-reference | ddi:DDB_G0269132 rno:29143 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.