LXL04_002518 | RubberDandelionOmics

Gene overview

LXL04_002518

Reference: OH-1004 Chr: Chr01 Coordinates: 50694866-50700064 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1782 bp · LXL04_002518|LXL04_002518|OH1004|cDNA

ATGAAGTCTTTTGGATGTCTGAAGAACAAGGGTGTGGATCTCGAGAAGCATTGTGTGCGAAAGATAGGAGATGGTCGGTCAACTAAATTTTGGGTTGATCTATGGGTTGGCGATGTCCCTTTAAAGACTCGGTTTAATCGTATTTTTGCGTTGGACCCGTTTCTGGATGCTCTCCTTGCTGATCGGGCTTCTCCTCATCAGCTTCTTGCAGCATTTGGACGGCAGCTGCGGTGTGGAGTTCCCGCTGTGCAATGGGCTGG...

CDS

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1782 bp · LXL04_002518|LXL04_002518|OH1004|CDS

ATGAAGTCTTTTGGATGTCTGAAGAACAAGGGTGTGGATCTCGAGAAGCATTGTGTGCGAAAGATAGGAGATGGTCGGTCAACTAAATTTTGGGTTGATCTATGGGTTGGCGATGTCCCTTTAAAGACTCGGTTTAATCGTATTTTTGCGTTGGACCCGTTTCTGGATGCTCTCCTTGCTGATCGGGCTTCTCCTCATCAGCTTCTTGCAGCATTTGGACGGCAGCTGCGGTGTGGAGTTCCCGCTGTGCAATGGGCTGG...

Protein

Download Protein FASTA

593 aa · LXL04_002518|LXL04_002518|OH1004|PROTEIN

MKSFGCLKNKGVDLEKHCVRKIGDGRSTKFWVDLWVGDVPLKTRFNRIFALDPFLDALLADRASPHQLLAAFGRQLRCGVPAVQWAGLVAVLQEVSLSAVSDSYVWDVDGQVDFSVALARRIIDKVLLGFSAVPTRWNTLVSIKVNVLLWRIERNRIRTRLNLRDKGIDLDSLLCPFWSLVGESADDLFAYCPCLSPLWGKVAAWWNVSLPPVCSIANFLQCTGITTLSSVRKRRFEAVVFIVFLGALEFSEYILFGTNK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002518`
TK1151 ID	TkA08G154460
OH-1004 ID	LXL04_002518
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	75.800
Protein coverage (%)	TK1151 37.654 / OH-1004 41.147 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002518

Location Chr01:50694866-50700064 (+)

Description Similar to XTH26: Probable xyloglucan endotransglucosylase/hydrolase protein 26

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g28850`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At5g57540`	May catalyze xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At5g57530`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At2g14620`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At4g30270`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002518 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Molecular Function

GO:0016762 xyloglucan:xyloglucosyl transferase activity Molecular Function

GO:0030247 polysaccharide binding Molecular Function

KEGG gene cross-reference

ath:AT4G28850

ath:AT5G57530

ath:AT5G57540

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.397

Rank 1 · LXL04_002518 · OH-1004

Nucleus0.342

Rank 2 · LXL04_002518 · OH-1004

Endoplasmic reticulum0.143

Rank 3 · LXL04_002518 · OH-1004

Cell membrane0.115

Rank 4 · LXL04_002518 · OH-1004

Mitochondrion0.107

Rank 5 · LXL04_002518 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13966.12zf-RVT135-199 aa

PF06955.20XET_C542-588 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002518	`PF13966.12`	zf-RVT	135	199	8.5e-08	33.5
LXL04_002518	`PF06955.20`	XET_C	542	588	2.1e-18	66.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SVV2`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 26	51.020%	Swiss-Prot	weak database homology
`Q9FKL8`	Arabidopsis thaliana	Putative xyloglucan endotransglucosylase/hydrolase protein 13	54.348%	Swiss-Prot	weak database homology
`Q9FKL9`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 12	74.286%	Swiss-Prot	weak database homology
`Q9ZVK1`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 10	21.575%	Swiss-Prot	weak database homology
`P24806`	Arabidopsis thaliana	Xyloglucan endotransglucosylase/hydrolase protein 24	43.836%	Swiss-Prot	weak database homology

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