LXL04_002514 | RubberDandelionOmics

Gene overview

LXL04_002514

Reference: OH-1004 Chr: Chr01 Coordinates: 50590877-50596807 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1548 bp · LXL04_002514|LXL04_002514|OH1004|cDNA

ATGGCCGGCGGAGGAATGGTGAGCGACAAGGGCGGTGCTAGGGCGGAGTTATACGAGCATAAGATTACCTCCTATTTCATATTTGCTTGCATCGTTGCTGCTCTTGGCGGATCTTTGTTTGGATATGATCTCGGTGTTTCCGGTGGAGTAACATCCATGGACCATTTCTTAAAAGAATTCTTCCCAAAAGTTTACAGAAGAAAACAAGAACATCTAAAAGAAACCGATTACTGCAAATACGACAACCAAATTCTCACCCT...

CDS

Download CDS FASTA

1548 bp · LXL04_002514|LXL04_002514|OH1004|CDS

ATGGCCGGCGGAGGAATGGTGAGCGACAAGGGCGGTGCTAGGGCGGAGTTATACGAGCATAAGATTACCTCCTATTTCATATTTGCTTGCATCGTTGCTGCTCTTGGCGGATCTTTGTTTGGATATGATCTCGGTGTTTCCGGTGGAGTAACATCCATGGACCATTTCTTAAAAGAATTCTTCCCAAAAGTTTACAGAAGAAAACAAGAACATCTAAAAGAAACCGATTACTGCAAATACGACAACCAAATTCTCACCCT...

Protein

Download Protein FASTA

515 aa · LXL04_002514|LXL04_002514|OH1004|PROTEIN

MAGGGMVSDKGGARAELYEHKITSYFIFACIVAALGGSLFGYDLGVSGGVTSMDHFLKEFFPKVYRRKQEHLKETDYCKYDNQILTLFTSSLYFAALVSTFLASHVTRSKGRRASILCGAVSFFAGAAINAGAQNIAMLIIGRCLLGVGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGIFIANFINNATEKHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGRLEEGRKVLERVRGTKNIEAEFQDLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002514`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002514

Location Chr01:50590877-50596807 (-)

Description Similar to STP14: Sugar transport protein 14

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g77210`	Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.	No verified direct reference in this release
`At4g02050`	Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.	No verified direct reference in this release
`At5g26340`	Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0218400`	Mediates active uptake of hexoses by sugar:proton symport (Probable).	Molecular cloning and expression analysis of a monosaccharide transporter gene OsMST4 from rice (Oryza sativa L.).2007 · DOI: 10.1007/s11103-007-9228-x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002514 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0015749 monosaccharide transmembrane transport Biological Process

GO:0042882 L-arabinose transmembrane transport Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0012505 endomembrane system Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G77210

ath:AT4G02050

ath:AT5G26340

dosa:Os03g0218400

osa:4332079

rcu:8262851

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.870

Rank 1 · LXL04_002514 · OH-1004

Cytoplasm0.111

Rank 2 · LXL04_002514 · OH-1004

Endoplasmic reticulum0.038

Rank 3 · LXL04_002514 · OH-1004

Mitochondrion0.035

Rank 4 · LXL04_002514 · OH-1004

Lysosome / Vacuole0.027

Rank 5 · LXL04_002514 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00083.31Sugar_tr30-488 aa

PF07690.22MFS_180-437 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002514	`PF00083.31`	Sugar_tr	30	488	1.5e-117	393.9
LXL04_002514	`PF07690.22`	MFS_1	80	437	4.1e-21	76.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GW61`	Arabidopsis thaliana	Sugar transport protein 14	76.707%	Swiss-Prot	strong database homology
`O04249`	Arabidopsis thaliana	Sugar transport protein 7	61.233%	Swiss-Prot	strong database homology
`Q94AZ2`	Arabidopsis thaliana	Sugar transport protein 13	56.164%	Swiss-Prot	strong database homology
`Q10PW9`	Oryza sativa subsp. japonica	Sugar transport protein MST4	56.400%	Swiss-Prot	strong database homology

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