LXL04_002502 | RubberDandelionOmics

Gene overview

LXL04_002502

Reference: OH-1004 Chr: Chr01 Coordinates: 50195334-50201095 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2430 bp · LXL04_002502|LXL04_002502|OH1004|cDNA

TGTAAGCTTGATTGACTCGTAATTTCTCACACCCTCACAACACAACAGACACCAGGCTTTCGACGGCCGTCAATGGCGGTCCCCGTAGATGCCATTATTAAGCAATCGCCGCCGTCTTCGAGTCTGCGTTTCGCCTTCGGAAATGTCCTCGCCTTCTTCATTCTCCTGTTAATCGGAGTACTCGCATTCTCGATCCGTCTTTTCTCGGTTATTAAGTATGAAAGTGTTATTCATGAATTCGATCCTTATTTCAATTACAG...

CDS

Download CDS FASTA

2358 bp · LXL04_002502|LXL04_002502|OH1004|CDS

ATGGCGGTCCCCGTAGATGCCATTATTAAGCAATCGCCGCCGTCTTCGAGTCTGCGTTTCGCCTTCGGAAATGTCCTCGCCTTCTTCATTCTCCTGTTAATCGGAGTACTCGCATTCTCGATCCGTCTTTTCTCGGTTATTAAGTATGAAAGTGTTATTCATGAATTCGATCCTTATTTCAATTACAGAGTCACTCAGTTCCTCACAAAGAACGGGATATATGACTTCTGGAATTGGTTTGACGATCGCACCTGGTACCC...

Protein

Download Protein FASTA

785 aa · LXL04_002502|LXL04_002502|OH1004|PROTEIN

MAVPVDAIIKQSPPSSSLRFAFGNVLAFFILLLIGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWKVLQSLNIPLSVETVCVFTAPVFSAFAAWATYLLTKEVKGTGAGLTAAVLLAMVPSYISRSVAGSYDNEAVAIFALIFTFYLYIKTLNTGSLFYATLNSISYFYMVCSWGGYTFIINLIPMHALLCIVTGRYSSRLYIAYAPLVVLGTLLAA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002502`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002502

Location Chr01:50195334-50201095 (+)

Description Similar to STT3A: Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g19690`	Catalytic subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation.	The STT3a subunit isoform of the Arabidopsis oligosaccharyltransferase controls adaptive responses to salt/osmotic stress.2003 · DOI: 10.1105/tpc.013862 Control of the pattern-recognition receptor EFR by an ER protein complex in plant immunity.2009 · DOI: 10.1038/emboj.2009.262 Receptor quality control in the endoplasmic reticulum for plant innate immunity.2009 · DOI: 10.1038/emboj.2009.263

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0519900`	Catalytic subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002502 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006487 protein N-linked glycosylation Biological Process

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0009651 response to salt stress Biological Process

GO:0043687 post-translational protein modification Biological Process

GO:0047484 regulation of response to osmotic stress Biological Process

GO:0180058 protein co-translational transfer of dolichol-linked oligosaccharide Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0008250 oligosaccharyltransferase complex Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT5G19690

bta:507815

ddi:DDB_G0285159

dosa:Os05g0519900

mmu:16430

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.826

Rank 1 · LXL04_002502 · OH-1004

Golgi apparatus0.101

Rank 2 · LXL04_002502 · OH-1004

Cytoplasm0.078

Rank 3 · LXL04_002502 · OH-1004

Nucleus0.070

Rank 4 · LXL04_002502 · OH-1004

Cell membrane0.047

Rank 5 · LXL04_002502 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02516.21STT325-428 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002502	`PF02516.21`	STT3	25	428	3.2e-104	350.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93ZY3`	Arabidopsis thaliana	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	85.863%	Swiss-Prot	strong database homology
`Q6F2Z1`	Oryza sativa subsp. japonica	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	81.161%	Swiss-Prot	strong database homology

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