LXL04_002469 | RubberDandelionOmics

Gene overview

LXL04_002469

Reference: OH-1004 Chr: Chr01 Coordinates: 49342894-49344969 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

747 bp · LXL04_002469|LXL04_002469|OH1004|cDNA

ATGGCAGTGGGGTTTAGGATAATGTGGTGTTGCTACTATGGTTCGAAGAAAAGAGGGTTGTCATTGGAAGAAAAGCGGGAAAAGATGCTTCAAATCTTTTACGACTCCCAAGATTTTTACCTTCTCAAAGAACTTGAAAAGTTGGGCCCTAGAAAAGGCGTTATCAGCCAATCTGTCAAAGATGTTGTCCAAACTCTAGTGGATGATGACTTGGTCTCAAAAGACAAGATAGGAACCTCGGTATACTTTTGGAGTCTTCC...

CDS

Download CDS FASTA

747 bp · LXL04_002469|LXL04_002469|OH1004|CDS

ATGGCAGTGGGGTTTAGGATAATGTGGTGTTGCTACTATGGTTCGAAGAAAAGAGGGTTGTCATTGGAAGAAAAGCGGGAAAAGATGCTTCAAATCTTTTACGACTCCCAAGATTTTTACCTTCTCAAAGAACTTGAAAAGTTGGGCCCTAGAAAAGGCGTTATCAGCCAATCTGTCAAAGATGTTGTCCAAACTCTAGTGGATGATGACTTGGTCTCAAAAGACAAGATAGGAACCTCGGTATACTTTTGGAGTCTTCC...

Protein

Download Protein FASTA

248 aa · LXL04_002469|LXL04_002469|OH1004|PROTEIN

MAVGFRIMWCCYYGSKKRGLSLEEKREKMLQIFYDSQDFYLLKELEKLGPRKGVISQSVKDVVQTLVDDDLVSKDKIGTSVYFWSLPSCAGNQLRNMSKKLESDLEISKKRHMELVEQCESLKKGREDSDAREEALSEFKAIEQKYNNLKEELGQYADNDPATFEAMITKFRKFYDLILEEAIKVAHEAANRWTDNIFTLRQWCSNNFPQAKEQLEQLYNEVGITEDFDYLELPAVTPVTVKQVKADE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002469`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002469

Location Chr01:49342894-49344969 (-)

Description Similar to MND1: Meiotic nuclear division protein 1 homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g29170`	Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis.	The Arabidopsis thaliana MND1 homologue plays a key role in meiotic homologous pairing, synapsis and recombination.2006 · DOI: 10.1242/jcs.02967 AtMND1 is required for homologous pairing during meiosis in Arabidopsis.2006 · DOI: 10.1186/1471-2199-7-24 The interplay of RecA-related proteins and the MND1-HOP2 complex during meiosis in Arabidopsis thaliana.2007 · DOI: 10.1371/journal.pgen.0030176

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_002469 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006302 double-strand break repair Biological Process

GO:0007129 homologous chromosome pairing at meiosis Biological Process

GO:0007131 reciprocal meiotic recombination Biological Process

GO:0009553 embryo sac development Biological Process

GO:0009555 pollen development Biological Process

GO:0010212 response to ionizing radiation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0003690 double-stranded DNA binding Molecular Function

KEGG gene cross-reference

ath:AT4G29170

bta:618239

hsa:84057

mmu:76915

xla:108699336

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.617

Rank 1 · LXL04_002469 · OH-1004

Cytoplasm0.454

Rank 2 · LXL04_002469 · OH-1004

Mitochondrion0.046

Rank 3 · LXL04_002469 · OH-1004

Endoplasmic reticulum0.037

Rank 4 · LXL04_002469 · OH-1004

Cell membrane0.036

Rank 5 · LXL04_002469 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03962.22Mnd129-87 aa

PF18517.7LZ3wCH180-231 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002469	`PF03962.22`	Mnd1	29	87	2.1e-25	89.4
LXL04_002469	`PF18517.7`	LZ3wCH	180	231	1.4e-20	73.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GYD2`	Arabidopsis thaliana	Meiotic nuclear division protein 1 homolog	68.880%	Swiss-Prot	strong database homology

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