LXL04_002167 | RubberDandelionOmics

Gene overview

LXL04_002167

Reference: OH-1004 Chr: Chr01 Coordinates: 43032222-43035882 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1659 bp · LXL04_002167|LXL04_002167|OH1004|cDNA

ATGACTTTTGCATCTCACATCTTCCGCCACTCTAAGCAGTTGAGAAATGCTTCTGGCTTAATACGGCAGGATCAGGCCATTTTGGTCAGGTGGTTTACTCATAGTACTCGTTCCGTCACTAGCAAAGGGGATGGAGTATCAAAGCTCCACCATGTTTCTGGGGAGAATGTTTGTGTATGTAGCTCTTGCAGTGGATCAATGTCAAGTACACCCATGTTCACTAGAAGTTATAGGGCAGTGAATCCCACAAAGGGGCAAAA...

CDS

Download CDS FASTA

1659 bp · LXL04_002167|LXL04_002167|OH1004|CDS

ATGACTTTTGCATCTCACATCTTCCGCCACTCTAAGCAGTTGAGAAATGCTTCTGGCTTAATACGGCAGGATCAGGCCATTTTGGTCAGGTGGTTTACTCATAGTACTCGTTCCGTCACTAGCAAAGGGGATGGAGTATCAAAGCTCCACCATGTTTCTGGGGAGAATGTTTGTGTATGTAGCTCTTGCAGTGGATCAATGTCAAGTACACCCATGTTCACTAGAAGTTATAGGGCAGTGAATCCCACAAAGGGGCAAAA...

Protein

Download Protein FASTA

552 aa · LXL04_002167|LXL04_002167|OH1004|PROTEIN

MTFASHIFRHSKQLRNASGLIRQDQAILVRWFTHSTRSVTSKGDGVSKLHHVSGENVCVCSSCSGSMSSTPMFTRSYRAVNPTKGQNALTARTEGTMFSRAISCSDVQVKRSFSSNSGLPPHQEIGMPSLSPTMTEGNIARWLKKEGDQVATGEVLCEVETDKATVEMECMEEGFLAKIVHGDGAKEIQVGQVIAITVEDKADIEKFKDYKPDTSSDGGAPEAPPAPTPPKEEVVEKPVSTPEPKAVKQSSSGSETTDRV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002167`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_002167

Location Chr01:43032222-43035882 (+)

Description Similar to At1g54220: Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g54220`	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	No verified direct reference in this release
`At3g13930`	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002167 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006006 glucose metabolic process Biological Process

GO:0006086 pyruvate decarboxylation to acetyl-CoA Biological Process

GO:0006099 tricarboxylic acid cycle Biological Process

GO:0042867 pyruvate catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0045254 pyruvate dehydrogenase complex Cellular Component

GO:0120212 sperm head-tail coupling apparatus Cellular Component

GO:0160157 branched-chain alpha-ketoacid dehydrogenase complex Cellular Component

KEGG gene cross-reference

ath:AT1G54220

ath:AT3G13930

hsa:1737

mmu:235339

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.937

Rank 1 · LXL04_002167 · OH-1004

Cytoplasm0.076

Rank 2 · LXL04_002167 · OH-1004

Nucleus0.049

Rank 3 · LXL04_002167 · OH-1004

Cell membrane0.027

Rank 4 · LXL04_002167 · OH-1004

Plastid0.020

Rank 5 · LXL04_002167 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00364.29Biotin_lipoyl124-195 aa

PF02817.23E3_binding260-295 aa

PF00198.292-oxoacid_dh322-552 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002167	`PF00364.29`	Biotin_lipoyl	124	195	2.3e-18	66.5
LXL04_002167	`PF02817.23`	E3_binding	260	295	5.4e-16	59.3
LXL04_002167	`PF00198.29`	2-oxoacid_dh	322	552	1.4e-79	267.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q5M729`	Arabidopsis thaliana	Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial	65.461%	Swiss-Prot	strong database homology
`Q8RWN9`	Arabidopsis thaliana	Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial	67.935%	Swiss-Prot	strong database homology

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