LXL04_002070 | RubberDandelionOmics

Gene overview

LXL04_002070

Reference: OH-1004 Chr: Chr01 Coordinates: 41296346-41299476 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1914 bp · LXL04_002070|LXL04_002070|OH1004|cDNA

ATGGCGGATGTTGGTGAAGAAGAGGAGTATGAGAGTGATCCAGAGCAGGCGAAGCTATCTCTGGCGATGCGGAGGAGGAGGGAGGCGAGTGACGATGAGGAGGAAGTGGATGACGATGATGATGTGAGGGCTAGGGGAAGGGTAAGGGTAATTGACTCTAGGGTTTCAGATTATGAATCGGACGATCAGGGTGCTGCGGCGGAGTATGATGATGACGAATATGATATAGCGGAGGAGGAAGAGCTGCTCGAGGAAGTTGA...

CDS

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1914 bp · LXL04_002070|LXL04_002070|OH1004|CDS

ATGGCGGATGTTGGTGAAGAAGAGGAGTATGAGAGTGATCCAGAGCAGGCGAAGCTATCTCTGGCGATGCGGAGGAGGAGGGAGGCGAGTGACGATGAGGAGGAAGTGGATGACGATGATGATGTGAGGGCTAGGGGAAGGGTAAGGGTAATTGACTCTAGGGTTTCAGATTATGAATCGGACGATCAGGGTGCTGCGGCGGAGTATGATGATGACGAATATGATATAGCGGAGGAGGAAGAGCTGCTCGAGGAAGTTGA...

Protein

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637 aa · LXL04_002070|LXL04_002070|OH1004|PROTEIN

MADVGEEEEYESDPEQAKLSLAMRRRREASDDEEEVDDDDDVRARGRVRVIDSRVSDYESDDQGAAAEYDDDEYDIAEEEELLEEVEDEELVKGRGRSEVQGVREDLDGVIEGSSVGVKRENDQTDGDGSYAPESVDQFDANANGAVGEGEGGQEEKKENEPFQVPTAGAFYMHDDRFRDSAGGRHRRTLGRGKLWETRDDRKWGHDKFEELSMQERHYDEGRRAPRGRNRGPRGRNRGEDRNFTSGNNRPKTYNNNNNN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002070`
TK1151 ID	TkA01G485010
OH-1004 ID	LXL04_002070
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002070

Location Chr01:41296346-41299476 (-)

Description Similar to MLN51: Protein MLN51 homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g80000`	Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_002070 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Biological Process

GO:0006397 mRNA processing Biological Process

GO:0006417 regulation of translation Biological Process

GO:0008380 RNA splicing Biological Process

GO:0051028 mRNA transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0035145 exon-exon junction complex Cellular Component

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G80000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.608

Rank 1 · LXL04_002070 · OH-1004

Nucleus0.456

Rank 2 · LXL04_002070 · OH-1004

Cell membrane0.046

Rank 3 · LXL04_002070 · OH-1004

Endoplasmic reticulum0.041

Rank 4 · LXL04_002070 · OH-1004

Golgi apparatus0.030

Rank 5 · LXL04_002070 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09405.16Btz148-235 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002070	`PF09405.16`	Btz	148	235	2.5e-17	64.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93ZJ9`	Arabidopsis thaliana	Protein MLN51 homolog	36.024%	Swiss-Prot	moderate database homology

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