Gene Card
Gene overview
cDNA / CDS / Protein Sequences
858 bp · LXL04_002019|LXL04_002019|OH1004|cDNA
ATGGAAGGAATTCGGCAGTTACCACACCATCTCTCTCCGCCGCCACTCACCGGAAAATGTTCCACACTCGGCAAAACCTCTCCATCTCACCAATCGATTCGAGTTGTTCAATCACAGTACAAACCGATTGCAAAACTTGAATTTTCTCCTTCGAAATCCGCCATTAAAGTGCATTTCCTCACGAAGAACAAAGGTCTAGGTCATAGTTCTTTTTCATCCGGTCCTCCTCGGGCCGGTTGGTTTCTAGGTCTgggtgagaa...
858 bp · LXL04_002019|LXL04_002019|OH1004|CDS
ATGGAAGGAATTCGGCAGTTACCACACCATCTCTCTCCGCCGCCACTCACCGGAAAATGTTCCACACTCGGCAAAACCTCTCCATCTCACCAATCGATTCGAGTTGTTCAATCACAGTACAAACCGATTGCAAAACTTGAATTTTCTCCTTCGAAATCCGCCATTAAAGTGCATTTCCTCACGAAGAACAAAGGTCTAGGTCATAGTTCTTTTTCATCCGGTCCTCCTCGGGCCGGTTGGTTTCTAGGTCTGGGTGAGAA...
Protein
Download Protein FASTA285 aa · LXL04_002019|LXL04_002019|OH1004|PROTEIN
MEGIRQLPHHLSPPPLTGKCSTLGKTSPSHQSIRVVQSQYKPIAKLEFSPSKSAIKVHFLTKNKGLGHSSFSSGPPRAGWFLGLGEKKKNITELPEIVKAGDPVLHEPAREVRPDEIGSERIQKIIDDMVKVMRAAPGVGLAAPQIGVPLKIIVLEDTEEYIGYAPKEETKAQNRQPFDLLASVIINPNLQKKGNKSALFFEGCLSVDGFRGMVERFLEVEVTGLDRYGQPITVVASGWQARILQHECDHLEGTLYVDKM...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_002019 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_002019 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:39714752-39715866 (+) | ||||||||||||
| Description | Similar to PDF1A: Peptide deformylase 1A, chloroplastic | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0006412 translation Biological Process GO:0008284 positive regulation of cell population proliferation Biological Process GO:0018206 peptidyl-methionine modification Biological Process GO:0043687 post-translational protein modification Biological Process GO:0051604 protein maturation Biological Process GO:0005739 mitochondrion Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0009507 chloroplast Cellular Component GO:0009570 chloroplast stroma Cellular Component GO:0042586 peptide deformylase activity Molecular Function GO:0046872 metal ion binding Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT1G15390 dosa:Os01g0555800 gvi:glr1729 mmu:68023 sly:544225 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01327.27Pep_deformylase96-263 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_002019 | PF01327.27 | Pep_deformylase | 96 | 263 | 2.9e-48 | 164.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.