LXL04_002011 | RubberDandelionOmics

Gene overview

LXL04_002011

Reference: OH-1004 Chr: Chr01 Coordinates: 39507307-39509827 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2330 bp · LXL04_002011|LXL04_002011|OH1004|cDNA

TGTCCAACATCGAGGAGAAAGTTGGATTCGGGGATGGAACTCCAAAAATGTACGCAACAATCGATCTAGACAAATGCAGAGTAGGCCGAACTAGATTACTAGAAGAAAACCCGGGAAACCCAAAATGGAACGAATCTTTCCACATTTACTGTGCTCACGCAGCCTCTAACGTAATATTCACTGTCAAAGACGATAACCCCATTGGTGCAACCCTAATCGGAAGAGCTTACATTCCGATCGAGGACCTTCTAGAAGGAGAA...

CDS

Download CDS FASTA

2283 bp · LXL04_002011|LXL04_002011|OH1004|CDS

ATGTACGCAACAATCGATCTAGACAAATGCAGAGTAGGCCGAACTAGATTACTAGAAGAAAACCCGGGAAACCCAAAATGGAACGAATCTTTCCACATTTACTGTGCTCACGCAGCCTCTAACGTAATATTCACTGTCAAAGACGATAACCCCATTGGTGCAACCCTAATCGGAAGAGCTTACATTCCGATCGAGGACCTTCTAGAAGGAGAAGAAGTAGATCAATGGGTTGAAATATTAGACGAAGAAAAAAACCCGGT...

Protein

Download Protein FASTA

760 aa · LXL04_002011|LXL04_002011|OH1004|PROTEIN

MYATIDLDKCRVGRTRLLEENPGNPKWNESFHIYCAHAASNVIFTVKDDNPIGATLIGRAYIPIEDLLEGEEVDQWVEILDEEKNPVEAGSKIHVKLQYFDVTRDRNWGRGIKSAKYPGVPYTFFTQRQGCRVSLYQDAHVPDNFIPKIPLSNGTFYEPQRCWEDVFDAITNAKHFIYITGWSVYTEISLIRDSRRQKEGGDVTLGELLKKKASEGVKVLMLVWDDRTSVDVLKKDGLMGTHDEDTENFFQGCEVQCILC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002011`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_002011`
Location	Chr01:39507307-39509827 (-)
Description	No functional description available
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_002011` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0009395 phospholipid catabolic process Biological Process GO:0016042 lipid catabolic process Biological Process GO:0034638 phosphatidylcholine catabolic process Biological Process GO:0046470 phosphatidylcholine metabolic process Biological Process GO:0005773 vacuole Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009536 plastid Cellular Component GO:0004630 D-type glycerophospholipase activity Molecular Function GO:0005509 calcium ion binding Molecular Function
KEGG gene cross-reference	nta:107779725 rcu:8282326 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.566

Rank 1 · LXL04_002011 · OH-1004

Nucleus0.239

Rank 2 · LXL04_002011 · OH-1004

Cell membrane0.225

Rank 3 · LXL04_002011 · OH-1004

Lysosome / Vacuole0.156

Rank 4 · LXL04_002011 · OH-1004

Golgi apparatus0.112

Rank 5 · LXL04_002011 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00168.37C22-78 aa

PF00614.30PLDc169-748 aa

PF13091.13PLDc_2605-642 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002011	`PF00168.37`	C2	2	78	2.8e-10	41.0
LXL04_002011	`PF00614.30`	PLDc	169	748	2.7e-235	782.7
LXL04_002011	`PF13091.13`	PLDc_2	605	642	1.1e-09	38.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card