LXL04_001979 | RubberDandelionOmics

Gene overview

LXL04_001979

Reference: OH-1004 Chr: Chr01 Coordinates: 38309036-38315155 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3186 bp · LXL04_001979|LXL04_001979|OH1004|cDNA

ATGAAGATGTCTCAACTTAACTCTTCTATCTTCCTCTTGCTTCTAACCCTTTCATTTTCTGTTTCATTGGCTTCTTTATCTTCCATTCTTGATGTTCCACTAGCTTCTTCTCAAGATATCGTAGATTGCATACTATCCAAATCCGAAAATGTCACCTTCACCTCTCAACTCATTTTCACCCGTGCCAATGCTTCTTTCCTACCCATTTGGGAAGTCAGGATCATGGACACTAGGTTCCTTAAACCCTCCACTCCTAAACC...

CDS

Download CDS FASTA

3186 bp · LXL04_001979|LXL04_001979|OH1004|CDS

ATGAAGATGTCTCAACTTAACTCTTCTATCTTCCTCTTGCTTCTAACCCTTTCATTTTCTGTTTCATTGGCTTCTTTATCTTCCATTCTTGATGTTCCACTAGCTTCTTCTCAAGATATCGTAGATTGCATACTATCCAAATCCGAAAATGTCACCTTCACCTCTCAACTCATTTTCACCCGTGCCAATGCTTCTTTCCTACCCATTTGGGAAGTCAGGATCATGGACACTAGGTTCCTTAAACCCTCCACTCCTAAACC...

Protein

Download Protein FASTA

1061 aa · LXL04_001979|LXL04_001979|OH1004|PROTEIN

MKMSQLNSSIFLLLLTLSFSVSLASLSSILDVPLASSQDIVDCILSKSENVTFTSQLIFTRANASFLPIWEVRIMDTRFLKPSTPKPSVIVTPVEETLVQTTLLCAKEHGYELRMRSGGHDFEGISYSANVPFVMIDFINMGAVDVDVESSTAWVQAGAALGAVYYAISQKTDTLYFPAGLCPTVNIGGYLGGAGYGNLLRKYGTGGDHVVDVHFIDVNGNILDRQSMGEDLFWAIRGGGVSSFGIGTIDTLLPLMDEKF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001979`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001979

Location Chr01:38309036-38315155 (+)

Description Similar to MEE23: Berberine bridge enzyme-like 15

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g34790`	Required for endosperm development and polar nuclei fusion.	No verified direct reference in this release
`At1g30760`	Mediates oxidation of p-hydroxylated derivatives of cinnamyl alcohol (i.e. the monolignols p-coumaryl-, coniferyl-, and sinapyl alcohol) to their corresponding aldehydes.	No verified direct reference in this release
`At5g44400`	Berberine bridge enzyme-like 26.	No verified direct reference in this release
`At5g44390`	Berberine bridge enzyme-like 25.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001979 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010197 polar nucleus fusion Biological Process

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0045551 cinnamyl-alcohol dehydrogenase activity Molecular Function

GO:0050268 coniferyl-alcohol dehydrogenase activity Molecular Function

GO:0050328 tetrahydroberberine oxidase activity Molecular Function

GO:0071949 FAD binding Molecular Function

KEGG gene cross-reference

ag:ADY15026

ath:AT2G34790

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.454

Rank 1 · LXL04_001979 · OH-1004

Lysosome / Vacuole0.210

Rank 2 · LXL04_001979 · OH-1004

Cytoplasm0.125

Rank 3 · LXL04_001979 · OH-1004

Endoplasmic reticulum0.109

Rank 4 · LXL04_001979 · OH-1004

Cell membrane0.065

Rank 5 · LXL04_001979 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01565.29FAD_binding_487-223 aa

PF08031.18BBE408-463 aa

PF01565.29FAD_binding_4602-738 aa

PF08031.18BBE997-1052 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001979	`PF01565.29`	FAD_binding_4	87	223	3.8e-42	144.0
LXL04_001979	`PF08031.18`	BBE	408	463	1.6e-38	131.2
LXL04_001979	`PF01565.29`	FAD_binding_4	602	738	3.8e-42	144.0
LXL04_001979	`PF08031.18`	BBE	997	1052	1.6e-38	131.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O64743`	Arabidopsis thaliana	Monolignol oxidoreductase AtBBE-like 15	43.173%	Swiss-Prot	moderate database homology
`Q93ZA3`	Arabidopsis thaliana	Monolignol oxidoreductase AtBBE-like 13	44.664%	Swiss-Prot	weak database homology
`Q9FKU8`	Arabidopsis thaliana	Berberine bridge enzyme-like 26	43.689%	Swiss-Prot	weak database homology
`Q9FKU9`	Arabidopsis thaliana	Berberine bridge enzyme-like 25	42.144%	Swiss-Prot	weak database homology

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