Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2148 bp · LXL04_001905|LXL04_001905|OH1004|cDNA
ATGAGCAGTAATGTGGTTGAAGATGGCGGTTACTCTTCGCTAAAAGACTTCAAATTGGAAATCATAAAAAACGACAGCGATCTCGATGGCGCCTTTTCTCTTTGCTTTTGGCTGTATTTACCTGCCGATTCATCCCCTTTTCCTTCAACCCTTCTTCTCCAGCATAATTCTGATACAACTATATCCATCCCGTTTCTTTCATTGAACGCAAATAAAGAACTCGTGCTTTACCCTATTCTTTCTGTACCAAAACAAACACC...
2148 bp · LXL04_001905|LXL04_001905|OH1004|CDS
ATGAGCAGTAATGTGGTTGAAGATGGCGGTTACTCTTCGCTAAAAGACTTCAAATTGGAAATCATAAAAAACGACAGCGATCTCGATGGCGCCTTTTCTCTTTGCTTTTGGCTGTATTTACCTGCCGATTCATCCCCTTTTCCTTCAACCCTTCTTCTCCAGCATAATTCTGATACAACTATATCCATCCCGTTTCTTTCATTGAACGCAAATAAAGAACTCGTGCTTTACCCTATTCTTTCTGTACCAAAACAAACACC...
Protein
Download Protein FASTA715 aa · LXL04_001905|LXL04_001905|OH1004|PROTEIN
MSSNVVEDGGYSSLKDFKLEIIKNDSDLDGAFSLCFWLYLPADSSPFPSTLLLQHNSDTTISIPFLSLNANKELVLYPILSVPKQTPIPNDVIPETEIPCTRTKTDALLNKWIHIGCEVSTNTMLLYINGENREIVMENHVTFTSDSSKTISLLGNKDDSIEGYLYGVQMLPVTSSIKDHYVKDPPVQIHVDGLSATDIEEDNDGVWTVVGGKASCRRNFSLDVVLMDAFGHFVNKEMEVWEFAISYSLTSVSIAVVATL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_001905 |
|---|---|
| TK1151 ID | TkA01G499710 |
| OH-1004 ID | LXL04_001905 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 98.900 |
| Protein coverage (%) | TK1151 99.567 / OH-1004 64.336Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_001905 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:36587232-36592185 (-) | |||||||||
| Description | Similar to SHB: SH2 domain-containing protein B | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0007165 signal transduction Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G17040 ath:AT1G78540 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF28397.1DG1062_N197-364 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_001905 | PF28397.1 | DG1062_N | 197 | 364 | 7.3e-45 | 153.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.