LXL04_001825 | RubberDandelionOmics

Gene overview

LXL04_001825

Reference: OH-1004 Chr: Chr01 Coordinates: 34364445-34365737 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

357 bp · LXL04_001825|LXL04_001825|OH1004|cDNA

ATGTCACCTTCTCTATTGCGAATGTTGCTTCCATTGTTGTTTCTTGTGGTTATGCTTCCACAAAGATCCAAAGGGGAATTTGAGCAATGGTGCATAGCAGATAGTCAGGCAACAGATGCGGAATTACAGGCAGCATTGGATTACACATGTGGGGAAGGTGGTGCCGATTGTACCAATATTCAAGAAAACAAATCTTGTTATTGGCCAAATACACTAAAAGATCATGCTTCATTTGCTTTTAATGCTTATTATCAAAAGTT...

CDS

Download CDS FASTA

357 bp · LXL04_001825|LXL04_001825|OH1004|CDS

ATGTCACCTTCTCTATTGCGAATGTTGCTTCCATTGTTGTTTCTTGTGGTTATGCTTCCACAAAGATCCAAAGGGGAATTTGAGCAATGGTGCATAGCAGATAGTCAGGCAACAGATGCGGAATTACAGGCAGCATTGGATTACACATGTGGGGAAGGTGGTGCCGATTGTACCAATATTCAAGAAAACAAATCTTGTTATTGGCCAAATACACTAAAAGATCATGCTTCATTTGCTTTTAATGCTTATTATCAAAAGTT...

Protein

Download Protein FASTA

118 aa · LXL04_001825|LXL04_001825|OH1004|PROTEIN

MSPSLLRMLLPLLFLVVMLPQRSKGEFEQWCIADSQATDAELQAALDYTCGEGGADCTNIQENKSCYWPNTLKDHASFAFNAYYQKFKHNGASCYFNSAAMTTEKDPSNGSCHYDYTP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001825`
TK1151 ID	TkA01G506870
OH-1004 ID	LXL04_001825
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001825

Location Chr01:34364445-34365737 (-)

Description Similar to At4g29360: Glucan endo-1,3-beta-glucosidase 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g29360`	Glucan endo-1,3-beta-glucosidase 12.	No verified direct reference in this release
`At1g11820`	Glucan endo-1,3-beta-glucosidase 1.	No verified direct reference in this release
`At3g13560`	Glucan endo-1,3-beta-glucosidase 4.	No verified direct reference in this release
`At5g56590`	Glucan endo-1,3-beta-glucosidase 13.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001825 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

GO:0031410 cytoplasmic vesicle Cellular Component

GO:0098552 side of membrane Cellular Component

GO:0042973 glucan endo-1,3-beta-D-glucosidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G11820

ath:AT3G13560

ath:AT4G29360

ath:AT5G56590

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.385

Rank 1 · LXL04_001825 · OH-1004

Cell membrane0.225

Rank 2 · LXL04_001825 · OH-1004

Lysosome / Vacuole0.173

Rank 3 · LXL04_001825 · OH-1004

Endoplasmic reticulum0.148

Rank 4 · LXL04_001825 · OH-1004

Cytoplasm0.129

Rank 5 · LXL04_001825 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07983.19X829-101 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001825	`PF07983.19`	X8	29	101	5e-22	79.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VYE5`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 12	47.253%	Swiss-Prot	moderate database homology
`O65399`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 1	50.575%	Swiss-Prot	strong database homology
`Q94CD8`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 4	47.126%	Swiss-Prot	moderate database homology
`Q9FJU9`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 13	45.882%	Swiss-Prot	moderate database homology

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