LXL04_001660 | RubberDandelionOmics

Gene overview

LXL04_001660

Reference: OH-1004 Chr: Chr01 Coordinates: 30864823-30866303 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1077 bp · LXL04_001660|LXL04_001660|OH1004|cDNA

ATGGCTGCTCTCGAATCTCTAAAACATTCCAATCAAACAATGAAGAACCTCGATAATTCATGGCAGTTCTTCCTACTCCTCACAATGTTCCTCGTTTGTACTCTCCACAGAGCCATAACCCTCATCTCAACCAAACTCACcaaaaccaccaccaccaccaccaccacccaaATCACAAACCAAACACCAATCTCCTTAGAAGTCAAAATCACACTTCCCACCAAAATCATATTTGGAGATGATGAAACCATTACAAGATT...

CDS

Download CDS FASTA

1077 bp · LXL04_001660|LXL04_001660|OH1004|CDS

ATGGCTGCTCTCGAATCTCTAAAACATTCCAATCAAACAATGAAGAACCTCGATAATTCATGGCAGTTCTTCCTACTCCTCACAATGTTCCTCGTTTGTACTCTCCACAGAGCCATAACCCTCATCTCAACCAAACTCACCAAAACCACCACCACCACCACCACCACCCAAATCACAAACCAAACACCAATCTCCTTAGAAGTCAAAATCACACTTCCCACCAAAATCATATTTGGAGATGATGAAACCATTACAAGATT...

Protein

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358 aa · LXL04_001660|LXL04_001660|OH1004|PROTEIN

MAALESLKHSNQTMKNLDNSWQFFLLLTMFLVCTLHRAITLISTKLTKTTTTTTTTQITNQTPISLEVKITLPTKIIFGDDETITRFNPSDLIQLPKNRLGEGSLGTLYKVVLDSGSIITIRKICANVTRGGNFEHWVRFFGSVSDDRWLLPLRFGFWYGGEAFVIHDYLCLGSLEELLHGSEGVRFTALNWEIREQIVLGGAKSVASIHSRGLICGVIKSSNFLIQSDFSPRLSSYETPYLISTSTIIRRNCGRMAPEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001660`
TK1151 ID	TkA01G520190
OH-1004 ID	LXL04_001660
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.200
Protein coverage (%)	TK1151 56.918 / OH-1004 90.503 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001660

Location Chr01:30864823-30866303 (+)

Description Similar to RLK902: Probable inactive receptor kinase RLK902

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g17840`	Probable inactive receptor kinase RLK902.	No verified direct reference in this release
`At2g26730`	Probable inactive receptor kinase At2g26730.	No verified direct reference in this release
`At1g48480`	Probable inactive receptor kinase At1g48480.	No verified direct reference in this release
`At5g05160`	Probable leucine-rich repeat receptor-like protein kinase.	No verified direct reference in this release
`At5g58300`	Probable inactive receptor kinase At5g58300.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001660 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0042742 defense response to bacterium Biological Process

GO:2000605 positive regulation of secondary growth Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009898 cytoplasmic side of plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G48480

ath:AT2G26730

ath:AT3G17840

ath:AT5G05160

ath:AT5G58300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.615

Rank 1 · LXL04_001660 · OH-1004

Nucleus0.242

Rank 2 · LXL04_001660 · OH-1004

Cytoplasm0.226

Rank 3 · LXL04_001660 · OH-1004

Endoplasmic reticulum0.054

Rank 4 · LXL04_001660 · OH-1004

Golgi apparatus0.024

Rank 5 · LXL04_001660 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr98-352 aa

PF00069.32Pkinase98-351 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001660	`PF07714.24`	PK_Tyr_Ser-Thr	98	352	5.5e-15	56.1
LXL04_001660	`PF00069.32`	Pkinase	98	351	1.5e-13	51.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LVI6`	Arabidopsis thaliana	Probable inactive receptor kinase RLK902	32.026%	Swiss-Prot	moderate database homology
`O48788`	Arabidopsis thaliana	Probable inactive receptor kinase At2g26730	33.219%	Swiss-Prot	moderate database homology
`Q9LP77`	Arabidopsis thaliana	Probable inactive receptor kinase At1g48480	31.058%	Swiss-Prot	moderate database homology
`Q9FHK7`	Arabidopsis thaliana	Probable leucine-rich repeat receptor-like protein kinase At5g05160	31.673%	Swiss-Prot	moderate database homology
`Q9LVM0`	Arabidopsis thaliana	Probable inactive receptor kinase At5g58300	32.028%	Swiss-Prot	moderate database homology

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