LXL04_001605 | RubberDandelionOmics

Gene overview

LXL04_001605

Reference: OH-1004 Chr: Chr01 Coordinates: 29877119-29878642 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

747 bp · LXL04_001605|LXL04_001605|OH1004|cDNA

ATGAGTGTCCATACAGACGAACCACTGACACCGGCCGGCCGTATGTTCGTGCAGCCGGCGATGGAGCAGATCATCAACTGCGTTCTAGGACTCGATCGTCCGGTCGGAATAGAAACCGTACGATCTGTCCTCTCTGATTCTCTCGTTATCAAGCACCCAAGATTCACCAGCCTGTTGGTCAAAGATAATCACGGCCGTGAACGTTGGAAAAAAGTCGAGCTCGATATCGACCGCCATATCATCTTTCTCCCTGATGCCGT...

CDS

Download CDS FASTA

747 bp · LXL04_001605|LXL04_001605|OH1004|CDS

ATGAGTGTCCATACAGACGAACCACTGACACCGGCCGGCCGTATGTTCGTGCAGCCGGCGATGGAGCAGATCATCAACTGCGTTCTAGGACTCGATCGTCCGGTCGGAATAGAAACCGTACGATCTGTCCTCTCTGATTCTCTCGTTATCAAGCACCCAAGATTCACCAGCCTGTTGGTCAAAGATAATCACGGCCGTGAACGTTGGAAAAAAGTCGAGCTCGATATCGACCGCCATATCATCTTTCTCCCTGATGCCGT...

Protein

Download Protein FASTA

248 aa · LXL04_001605|LXL04_001605|OH1004|PROTEIN

MSVHTDEPLTPAGRMFVQPAMEQIINCVLGLDRPVGIETVRSVLSDSLVIKHPRFTSLLVKDNHGRERWKKVELDIDRHIIFLPDAVGNNDDDEAAVNDYVADLTVSCPLSTDKPLWEVHVLPAHKCVVMRLHHSLGDGVSLLSLMLTMCRKVSDGDKMPTIEPPSLSRNDRRESAGERLWKLLKMMLFTWVYMFEFCMRALWVRDKKTVVRGGAGVELWPRKLATARFILDDMKTIKNAVVNTVDVK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001605`
TK1151 ID	TkA01G522780
OH-1004 ID	LXL04_001605
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 90.511 / OH-1004 50.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_001605

Location Chr01:29877119-29878642 (-)

Description Similar to WSD1: O-acyltransferase WSD1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g53390`	Bifunctional wax ester synthase/diacylglycerol acyltransferase (By similarity).	Physical interaction of floral organs controls petal morphogenesis in Arabidopsis.2013 · DOI: 10.1104/pp.112.212084 The Half-Size ABC Transporter FOLDED PETALS 2/ABCG13 Is Involved in Petal Elongation through Narrow Spaces in Arabidopsis thaliana Floral Buds.2014 · DOI: 10.3390/plants3030348
`At5g53380`	Bifunctional wax ester synthase/diacylglycerol acyltransferase (By similarity).	No verified direct reference in this release
`At1g72110`	Bifunctional wax ester synthase/diacylglycerol acyltransferase (By similarity).	No verified direct reference in this release
`At3g49200`	Bifunctional wax ester synthase/diacylglycerol acyltransferase (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001605 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0019432 triglyceride biosynthetic process Biological Process

GO:0048441 petal development Biological Process

GO:0048446 petal morphogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004144 diacylglycerol O-acyltransferase activity Molecular Function

GO:0008374 O-acyltransferase activity Molecular Function

GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity Molecular Function

KEGG gene cross-reference

ag:AAZ08051

ath:AT1G72110

ath:AT3G49200

ath:AT5G53380

ath:AT5G53390

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.651

Rank 1 · LXL04_001605 · OH-1004

Golgi apparatus0.133

Rank 2 · LXL04_001605 · OH-1004

Nucleus0.120

Rank 3 · LXL04_001605 · OH-1004

Cytoplasm0.119

Rank 4 · LXL04_001605 · OH-1004

Cell membrane0.102

Rank 5 · LXL04_001605 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03007.22WS_DGAT_cat53-240 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001605	`PF03007.22`	WS_DGAT_cat	53	240	3.2e-10	41.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q5KS41`	Arabidopsis thaliana	Wax ester synthase/diacylglycerol acyltransferase 11	30.620%	Swiss-Prot	moderate database homology
`Q9FK04`	Arabidopsis thaliana	Wax ester synthase/diacylglycerol acyltransferase 10	33.588%	Swiss-Prot	moderate database homology
`Q9C7H4`	Arabidopsis thaliana	Wax ester synthase/diacylglycerol acyltransferase 2	30.830%	Swiss-Prot	moderate database homology
`Q9M3B2`	Arabidopsis thaliana	Wax ester synthase/diacylglycerol acyltransferase 5	31.698%	Swiss-Prot	moderate database homology

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