LXL04_001599 | RubberDandelionOmics

Gene overview

LXL04_001599

Reference: OH-1004 Chr: Chr01 Coordinates: 29831550-29833375 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1410 bp · LXL04_001599|LXL04_001599|OH1004|cDNA

ATGTTGCCCATCAATACATTATTCTATAACCCTAAACAAGTTTCAATCGCTTTGATATCCAACTTCATTACCTCTGAGCAAAATATGGTCCATAAAGCATCGATTCCATGGAAAATATCGACTGCTGTTAACCATGAAGCCGGAATTTCTGTAAAAGTAAATGAAGAAGAGAATCTTCCATATGATAAAAATGCAGCTTTAGAGGAAACCGTGAAAAACCTCCATGAACAGGTAGCTTGTCTTCTCTGTGAGTGTAATGC...

CDS

Download CDS FASTA

1410 bp · LXL04_001599|LXL04_001599|OH1004|CDS

ATGTTGCCCATCAATACATTATTCTATAACCCTAAACAAGTTTCAATCGCTTTGATATCCAACTTCATTACCTCTGAGCAAAATATGGTCCATAAAGCATCGATTCCATGGAAAATATCGACTGCTGTTAACCATGAAGCCGGAATTTCTGTAAAAGTAAATGAAGAAGAGAATCTTCCATATGATAAAAATGCAGCTTTAGAGGAAACCGTGAAAAACCTCCATGAACAGGTAGCTTGTCTTCTCTGTGAGTGTAATGC...

Protein

Download Protein FASTA

469 aa · LXL04_001599|LXL04_001599|OH1004|PROTEIN

MLPINTLFYNPKQVSIALISNFITSEQNMVHKASIPWKISTAVNHEAGISVKVNEEENLPYDKNAALEETVKNLHEQVACLLCECNAKDELMAEHMKTTQEAITEREKAEAEVAIWKQELEDTLQHNVSAYERLVDLNASLKNCKTQLNSLKLEQNQWVNLEKSHKKLESKYTETRKKLANLTLENALLTKALVKKQEDHVSNQISKPRNADVANWQHQESAKLEAEKQRLRLLVKKRVPVQSMGLMMKKISEMEEENGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001599`
TK1151 ID	TkA01G522920
OH-1004 ID	LXL04_001599
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001599

Location Chr01:29831550-29833375 (+)

Description Similar to FPP2: Filament-like plant protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g21810`	Ensures, when in complex with FPP3/VETH1 and COG2, the correct secondary cell wall (SCW) deposition pattern by recruiting exocyst components to cortical microtubules in xylem cells during secondary cell wall deposition by recruiting EXO70A1.	No verified direct reference in this release
`At4g36120`	Filament-like plant protein 5.	No verified direct reference in this release
`At1g19835`	Filament-like plant protein 4.	No verified direct reference in this release
`At1g77580`	Filament-like plant protein 1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001599 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010090 trichome morphogenesis Biological Process

GO:0046785 microtubule polymerization Biological Process

GO:0060178 regulation of exocyst localization Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0031410 cytoplasmic vesicle Cellular Component

GO:0008017 microtubule binding Molecular Function

GO:0030674 protein-macromolecule adaptor activity Molecular Function

KEGG gene cross-reference

ath:AT1G19835

ath:AT1G21810

ath:AT1G77580

ath:AT4G36120

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.466

Rank 1 · LXL04_001599 · OH-1004

Nucleus0.326

Rank 2 · LXL04_001599 · OH-1004

Cell membrane0.275

Rank 3 · LXL04_001599 · OH-1004

Endoplasmic reticulum0.061

Rank 4 · LXL04_001599 · OH-1004

Golgi apparatus0.048

Rank 5 · LXL04_001599 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05911.17FPP88-198 aa

PF05911.17FPP209-242 aa

PF05911.17FPP264-351 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001599	`PF05911.17`	FPP	88	198	8e-36	124.4
LXL04_001599	`PF05911.17`	FPP	209	242	8e-36	124.4
LXL04_001599	`PF05911.17`	FPP	264	351	8e-36	124.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SFF4`	Arabidopsis thaliana	Filament-like plant protein 2	31.548%	Swiss-Prot	weak database homology
`O65649`	Arabidopsis thaliana	Filament-like plant protein 5	28.279%	Swiss-Prot	weak database homology
`Q0WSY2`	Arabidopsis thaliana	Filament-like plant protein 4	25.914%	Swiss-Prot	weak database homology
`Q9CAP9`	Arabidopsis thaliana	Filament-like plant protein 1	31.088%	Swiss-Prot	weak database homology

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