LXL04_001550 | RubberDandelionOmics

Gene overview

LXL04_001550

Reference: OH-1004 Chr: Chr01 Coordinates: 28958260-28959614 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1276 bp · LXL04_001550|LXL04_001550|OH1004|cDNA

AAGTCGTATAAAGTTTGATATAAAAACACTCTGTTGCCAGCTCCCTCCCCAACCTTCTCCTCCCTTCCATCTATATCTGCCGGAAAATCCATTTGCCATATACACGATGAGCTGGTGGTGGGCCGGAGCAATTGGAGCTGCAAAGAAAAAGGTCAATGAGGACGACGCGCCACCCAAATACCAGAGCGTTGCTCTAATCCTCGGAGTCACCGGAATCGTCGGCAACAGCCTCGCCGAAATCCTTCCACTCTCCGACACAC...

CDS

Download CDS FASTA

1200 bp · LXL04_001550|LXL04_001550|OH1004|CDS

CTGCCGGAAAATCCATTTGCCATATACACGATGAGCTGGTGGTGGGCCGGAGCAATTGGAGCTGCAAAGAAAAAGGTCAATGAGGACGACGCGCCACCCAAATACCAGAGCGTTGCTCTAATCCTCGGAGTCACCGGAATCGTCGGCAACAGCCTCGCCGAAATCCTTCCACTCTCCGACACACCCGGCGGTCCCTGGAAGGTCTACGGAGTCGCCCGCCGCCCTCGCCCCCAATGGAACGCCGACCACCCAATCGAATA...

Protein

Download Protein FASTA

399 aa · LXL04_001550|LXL04_001550|OH1004|PROTEIN

MPENPFAIYTMSWWWAGAIGAAKKKVNEDDAPPKYQSVALILGVTGIVGNSLAEILPLSDTPGGPWKVYGVARRPRPQWNADHPIEYIQCDISDPEETLTKLGDLQDVTHLFYVTWANRATESENCEINGKMLKNVLDAVIPNSPNLQHISLQTGRKHYLGPSELHGKVAHDPPFHEDLPRLEAPNFYYTLEDITFKSVEQKEGLTWSIHRPGVIFGFSPYSMMNIIGTLCVYATICKHEGVPFKFPGTKEAWDHYSDVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001550`
TK1151 ID	TkA01G526400
OH-1004 ID	LXL04_001550
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 97.494 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_001550

Location Chr01:28958260-28959614 (+)

Description Similar to ISY1: (S)-8-oxocitronellyl enol synthase ISY1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g24220`	Involved in vascular strand development.	Involvement of the VEP1 gene in vascular strand development in Arabidopsis thaliana.2002 · DOI: 10.1093/pcp/pcf042 The VEP1 gene (At4g24220) encodes a short-chain dehydrogenase/reductase with 3-oxo-Delta4,5-steroid 5beta-reductase activity in Arabidopsis thaliana L.2009 · DOI: 10.1016/j.biochi.2008.12.005

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001550 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006720 isoprenoid metabolic process Biological Process

GO:0008202 steroid metabolic process Biological Process

GO:0009611 response to wounding Biological Process

GO:0010051 xylem and phloem pattern formation Biological Process

GO:0043693 monoterpene biosynthetic process Biological Process

GO:0005829 cytosol Cellular Component

GO:0000166 nucleotide binding Molecular Function

GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors Molecular Function

GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor Molecular Function

GO:0035671 enone reductase activity Molecular Function

GO:0046983 protein dimerization activity Molecular Function

GO:0047787 Delta4-3-oxosteroid 5beta-reductase activity Molecular Function

KEGG gene cross-reference

ath:AT4G24220

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.561

Rank 1 · LXL04_001550 · OH-1004

Endoplasmic reticulum0.205

Rank 2 · LXL04_001550 · OH-1004

Nucleus0.151

Rank 3 · LXL04_001550 · OH-1004

Golgi apparatus0.095

Rank 4 · LXL04_001550 · OH-1004

Peroxisome0.071

Rank 5 · LXL04_001550 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01370.28Epimerase39-285 aa

PF22917.3PRISE99-350 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001550	`PF01370.28`	Epimerase	39	285	7.4e-08	32.8
LXL04_001550	`PF22917.3`	PRISE	99	350	4.8e-29	102.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9STX2`	Arabidopsis thaliana	3-oxo-Delta(4,5)-steroid 5-beta-reductase	69.330%	Swiss-Prot	strong database homology

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