LXL04_001277 | RubberDandelionOmics

Gene overview

LXL04_001277

Reference: OH-1004 Chr: Chr01 Coordinates: 23372831-23378247 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3651 bp · LXL04_001277|LXL04_001277|OH1004|cDNA

ATGGCGGAGACCAAACCGGCGGATACCAAAACGGCGGAGACCAAATCGGCGGATACCAAAACGGCGGAGACGTTAGACACATTTTCGCTTTCTGTGGGGTCGATGGTTGAAGAAGTTCTTCAGGAGCAAGGCCCGAAATTGTGCGAGGCCAATGTGCCAGTCAAGCCTGATTCAAAAATCGCAAGAAAAAGAAATGATGCAACAAGATTTCTAAGAAAGTCGGTAGGTGTGGTGGCTGCAAAAGATTTACCAGCCGAGCC...

CDS

Download CDS FASTA

3651 bp · LXL04_001277|LXL04_001277|OH1004|CDS

ATGGCGGAGACCAAACCGGCGGATACCAAAACGGCGGAGACCAAATCGGCGGATACCAAAACGGCGGAGACGTTAGACACATTTTCGCTTTCTGTGGGGTCGATGGTTGAAGAAGTTCTTCAGGAGCAAGGCCCGAAATTGTGCGAGGCCAATGTGCCAGTCAAGCCTGATTCAAAAATCGCAAGAAAAAGAAATGATGCAACAAGATTTCTAAGAAAGTCGGTAGGTGTGGTGGCTGCAAAAGATTTACCAGCCGAGCC...

Protein

Download Protein FASTA

1216 aa · LXL04_001277|LXL04_001277|OH1004|PROTEIN

MAETKPADTKTAETKSADTKTAETLDTFSLSVGSMVEEVLQEQGPKLCEANVPVKPDSKIARKRNDATRFLRKSVGVVAAKDLPAEPSENDFRLGLRSGIVFCKYMNKIEPGAISKIVEAPFDSVIIPDGEPLSSSQYFENITNFLSAINERGLPSFEASDLEQGGRIVKVVNCVLALKAYGEWKKAGANGTFRWGIKKPSSERKEKVHKALDMNKCVELWKDEVKEKSLQERVRDLLSNHKPRDVPIIVEIVLSKLTED...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001277`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001277

Location Chr01:23372831-23378247 (+)

Description Similar to KIN14F: Kinesin-like protein KIN-14F

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g09170`	Kinesin-like protein KIN-14H.	No verified direct reference in this release
`At5g27000`	Microtubule-binding motor protein.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0301800`	Kinesin-like protein KIN-14F.	No verified direct reference in this release
`Os12g0547500`	Minus end-directed motor protein that transports actin filaments along microtubules.	Dynamic bridges--a calponin-domain kinesin from rice links actin filaments and microtubules in both cycling and non-cycling cells.2009 · DOI: 10.1093/pcp/pcp094 A kinesin with calponin-homology domain is involved in premitotic nuclear migration.2010 · DOI: 10.1093/jxb/erq164 The non-processive rice kinesin-14 OsKCH1 transports actin filaments along microtubules with two distinct velocities.2015 · DOI: 10.1038/nplants.2015.111
`Os11g0672400`	Kinesin-like protein KIN-14P.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_001277 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007017 microtubule-based process Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0007097 nuclear migration Biological Process

GO:0031534 minus-end directed microtubule sliding Biological Process

GO:0051647 nucleus localization Biological Process

GO:0005874 microtubule Cellular Component

GO:0015629 actin cytoskeleton Cellular Component

GO:0015630 microtubule cytoskeleton Cellular Component

GO:0003777 microtubule motor activity Molecular Function

GO:0003779 actin binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008017 microtubule binding Molecular Function

KEGG gene cross-reference

dosa:Os03g0301800

dosa:Os12g0547500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.707

Rank 1 · LXL04_001277 · OH-1004

Cell membrane0.222

Rank 2 · LXL04_001277 · OH-1004

Nucleus0.179

Rank 3 · LXL04_001277 · OH-1004

Golgi apparatus0.048

Rank 4 · LXL04_001277 · OH-1004

Endoplasmic reticulum0.040

Rank 5 · LXL04_001277 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00307.37CH88-182 aa

PF16796.12Microtub_bd785-942 aa

PF00225.30Kinesin825-1125 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001277	`PF00307.37`	CH	88	182	3.1e-11	44.2
LXL04_001277	`PF16796.12`	Microtub_bd	785	942	2.3e-40	138.8
LXL04_001277	`PF00225.30`	Kinesin	825	1125	8.9e-104	347.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4HZF0`	Arabidopsis thaliana	Kinesin-like protein KIN-14H	61.883%	Swiss-Prot	weak database homology
`O81635`	Arabidopsis thaliana	Kinesin-like protein KIN-14G	62.929%	Swiss-Prot	weak database homology
`Q10MN5`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-14F	63.657%	Swiss-Prot	weak database homology
`Q0IMS9`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-14Q	59.016%	Swiss-Prot	weak database homology
`B9G8P1`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-14P	61.319%	Swiss-Prot	weak database homology

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