LXL04_001168 | RubberDandelionOmics

Gene overview

LXL04_001168

Reference: OH-1004 Chr: Chr01 Coordinates: 21399476-21400721 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

621 bp · LXL04_001168|LXL04_001168|OH1004|cDNA

ATGGTGTCGCTGAAGCTACAGAAGCGGCTTGCCGCTAGCGTCCTCAAGTGCGGCAGAGGCAAGGTTTGGCTAGATCCAAACGAAGGCAATGAGATTTCCATGGCCAATTCGCGTCAGAACATCAGGAAGTTGGTGAAGGATGGATTTATCATCAGGAAGCCCACCAAGATTCACTCACGATCCCGTGCTCGTCGAATGAAGGAGGCGAAAAGGAAAGGGCGTCATTCTGGatatgGTAAACGTAAGGGAACCCGGGAGGC...

CDS

Download CDS FASTA

621 bp · LXL04_001168|LXL04_001168|OH1004|CDS

ATGGTGTCGCTGAAGCTACAGAAGCGGCTTGCCGCTAGCGTCCTCAAGTGCGGCAGAGGCAAGGTTTGGCTAGATCCAAACGAAGGCAATGAGATTTCCATGGCCAATTCGCGTCAGAACATCAGGAAGTTGGTGAAGGATGGATTTATCATCAGGAAGCCCACCAAGATTCACTCACGATCCCGTGCTCGTCGAATGAAGGAGGCGAAAAGGAAAGGGCGTCATTCTGGATATGGTAAACGTAAGGGAACCCGGGAGGC...

Protein

Download Protein FASTA

206 aa · LXL04_001168|LXL04_001168|OH1004|PROTEIN

MVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREERFAQGPQERVPAPAAAATPAVPKKSKK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001168`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001168

Location Chr01:21399476-21400721 (+)

Description Similar to RPL19B: 60S ribosomal protein L19-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16780`	Large ribosomal subunit protein eL19z.	No verified direct reference in this release
`At1g02780`	Large ribosomal subunit protein eL19x.	No verified direct reference in this release
`At4g02230`	Large ribosomal subunit protein eL19y.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_001168 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002181 cytoplasmic translation Biological Process

GO:0006412 translation Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003729 mRNA binding Molecular Function

GO:0003735 structural constituent of ribosome Molecular Function

KEGG gene cross-reference

ath:AT1G02780

ath:AT3G16780

ath:AT4G02230

dme:Dmel_CG2746

rno:81767

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.894

Rank 1 · LXL04_001168 · OH-1004

Nucleus0.224

Rank 2 · LXL04_001168 · OH-1004

Endoplasmic reticulum0.106

Rank 3 · LXL04_001168 · OH-1004

Mitochondrion0.017

Rank 4 · LXL04_001168 · OH-1004

Cell membrane0.013

Rank 5 · LXL04_001168 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01280.27Ribosomal_L19e4-54 aa

PF25476.2Ribosomal_L19e_C56-146 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001168	`PF01280.27`	Ribosomal_L19e	4	54	2.9e-27	95.1
LXL04_001168	`PF25476.2`	Ribosomal_L19e_C	56	146	3.9e-35	120.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LUQ6`	Arabidopsis thaliana	Large ribosomal subunit protein eL19z	84.211%	Swiss-Prot	strong database homology
`Q9SRX2`	Arabidopsis thaliana	Large ribosomal subunit protein eL19x	91.892%	Swiss-Prot	strong database homology
`P49693`	Arabidopsis thaliana	Large ribosomal subunit protein eL19y	87.019%	Swiss-Prot	strong database homology

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