Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2751 bp · LXL04_001147|LXL04_001147|OH1004|cDNA
ATGGCCAGCGACCTCGAAGAACGTAAGCACCGTCGTTCCTCCGATGACGAATCTGAAGAACCCTCGAAACGCCATAAGCATCGCCATCAccgccgccaccaccaccaccgtcATCATAGTCGAAAGCACGACAGCCACGAAGACAAACGTGAGGAAGGCGGGGAAGAAGCCACAGATATGCCTCCTCCTCCTTTTCATCCTCCGTCTGCTAATTCGGGGCCCGATTATGACATGGAGGAAGGGGAGATTGTGGAAGAGTA...
2751 bp · LXL04_001147|LXL04_001147|OH1004|CDS
ATGGCCAGCGACCTCGAAGAACGTAAGCACCGTCGTTCCTCCGATGACGAATCTGAAGAACCCTCGAAACGCCATAAGCATCGCCATCACCGCCGCCACCACCACCACCGTCATCATAGTCGAAAGCACGACAGCCACGAAGACAAACGTGAGGAAGGCGGGGAAGAAGCCACAGATATGCCTCCTCCTCCTTTTCATCCTCCGTCTGCTAATTCGGGGCCCGATTATGACATGGAGGAAGGGGAGATTGTGGAAGAGTA...
Protein
Download Protein FASTA916 aa · LXL04_001147|LXL04_001147|OH1004|PROTEIN
MASDLEERKHRRSSDDESEEPSKRHKHRHHRRHHHHRHHSRKHDSHEDKREEGGEEATDMPPPPFHPPSANSGPDYDMEEGEIVEEYGADVGVKKTACSDAESGEIQTETHGALVVPNHSLVKEENLSKENNGNGYNIKTDHDDDREMRAHKNFPSDDNNHLKSHKDSSRNHTHKRSREDVSTTSRSRSHEHKEGRERSRSRSISHGASRLETHKEDVEYYTSRKQDGESERTNKPSKDYRHGSRDLVRDKERERSSSHS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_001147 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_001147 |
|---|---|
| Location | Chr01:21095217-21100121 (-) |
| Description | Similar to Prpf4b: Serine/threonine-protein kinase PRP4 homolog |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000244 spliceosomal tri-snRNP complex assembly Biological Process GO:0000387 spliceosomal snRNP assembly Biological Process GO:0000388 spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) Biological Process GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0035332 positive regulation of hippo signaling Biological Process GO:0045292 mRNA cis splicing, via spliceosome Biological Process GO:0046827 positive regulation of protein export from nucleus Biological Process GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint Biological Process GO:0000776 kinetochore Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005681 spliceosomal complex Cellular Component |
| KEGG gene cross-reference | bta:512236 hsa:8899 mmu:19134 pon:100173192 rno:291078 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00069.32Pkinase573-887 aaPF07714.24PK_Tyr_Ser-Thr580-789 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_001147 | PF00069.32 | Pkinase | 573 | 887 | 1.4e-47 | 163.0 |
| LXL04_001147 | PF07714.24 | PK_Tyr_Ser-Thr | 580 | 789 | 2.6e-20 | 73.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.