Gene Card
Gene overview
cDNA / CDS / Protein Sequences
4005 bp · LXL04_001087|LXL04_001087|OH1004|cDNA
ATGACGGCGACCCTACCGCCGACGACGAACATGAGTCTCTGGGAAGGGTTGATGGAAATGACGAAGTCTGCTCAAAATAAGGGCACAGATCCCTTGATGTGGGCGGATCAGCTCTCCTCTAGCCTGTCTTCTGCCGGAATCGCCATGCCGTCGACGGAGGTGGCCGAGTTGCTCGTTTCTCATATTTGTTGGTCTAATAATCTCCCAATTGCTTGGAAATATCTCGAAAAAGCGCTAACTCTTAGAATTGCTCCGCCACT...
4005 bp · LXL04_001087|LXL04_001087|OH1004|CDS
ATGACGGCGACCCTACCGCCGACGACGAACATGAGTCTCTGGGAAGGGTTGATGGAAATGACGAAGTCTGCTCAAAATAAGGGCACAGATCCCTTGATGTGGGCGGATCAGCTCTCCTCTAGCCTGTCTTCTGCCGGAATCGCCATGCCGTCGACGGAGGTGGCCGAGTTGCTCGTTTCTCATATTTGTTGGTCTAATAATCTCCCAATTGCTTGGAAATATCTCGAAAAAGCGCTAACTCTTAGAATTGCTCCGCCACT...
Protein
Download Protein FASTA1334 aa · LXL04_001087|LXL04_001087|OH1004|PROTEIN
MTATLPPTTNMSLWEGLMEMTKSAQNKGTDPLMWADQLSSSLSSAGIAMPSTEVAELLVSHICWSNNLPIAWKYLEKALTLRIAPPLLVLALLSNSVIPNRRSQPAAYRIYLELLKRHIFPLASEVNGPKYHKIMESIDKALHLSQRFGIPSTEPGLLLVEFVFAIVWQLLDASIDDEGLMELVPEKRSTWPIKPQDMEIDDHNIGEKKIDRHERLYKTNTTLAIEIIGQLYQNKVTSRILSLARQNMPGHWGSFIHNLR...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_001087 |
|---|---|
| TK1151 ID | TkA01G562060 |
| OH-1004 ID | LXL04_001087 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 99.500 |
| Protein coverage (%) | TK1151 96.442 / OH-1004 58.996Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_001087 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:19955192-19960670 (+) | |||||||||
| Description | Similar to MED33A: Mediator of RNA polymerase II transcription subunit 33A | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0009698 phenylpropanoid metabolic process Biological Process GO:2000762 regulation of phenylpropanoid metabolic process Biological Process GO:0016020 membrane Cellular Component GO:0016592 mediator complex Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G48110 ath:AT3G23590 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF27814.1MED33_TPR-like_2nd107-289 aaPF27774.1MED33_TPR-like_mid800-1042 aaPF27769.1MED33_C1101-1284 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_001087 | PF27814.1 | MED33_TPR-like_2nd | 107 | 289 | 2.3e-80 | 269.4 |
| LXL04_001087 | PF27774.1 | MED33_TPR-like_mid | 800 | 1042 | 1.5e-113 | 378.6 |
| LXL04_001087 | PF27769.1 | MED33_C | 1101 | 1284 | 6.9e-73 | 245.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.