LXL04_001024 | RubberDandelionOmics

Gene overview

LXL04_001024

Reference: OH-1004 Chr: Chr01 Coordinates: 18655038-18657818 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1797 bp · LXL04_001024|LXL04_001024|OH1004|cDNA

ATGGAGAACTATGAAATTCTAGAACAGATTGGGAAAGGCTCCTTTGCTTCTGCACATCTTGTCAGACATAAACATGAAAAGAAAAGGTATGTGTTGAAGAAGATTCGACTTGCCCGCCAGTCTGACAGAACCCGCAGATCTGCTCTCCTCGAGATGGAGCTTATTTCCACAGTGCAAAACCCTTTTATAGTGGAGTACAAAGATTCTTGGGTTGAAAAAGGTTGCTATGCATGTATTGTTATAGCATACTGTGAAGGAGG...

CDS

Download CDS FASTA

1797 bp · LXL04_001024|LXL04_001024|OH1004|CDS

ATGGAGAACTATGAAATTCTAGAACAGATTGGGAAAGGCTCCTTTGCTTCTGCACATCTTGTCAGACATAAACATGAAAAGAAAAGGTATGTGTTGAAGAAGATTCGACTTGCCCGCCAGTCTGACAGAACCCGCAGATCTGCTCTCCTCGAGATGGAGCTTATTTCCACAGTGCAAAACCCTTTTATAGTGGAGTACAAAGATTCTTGGGTTGAAAAAGGTTGCTATGCATGTATTGTTATAGCATACTGTGAAGGAGG...

Protein

Download Protein FASTA

598 aa · LXL04_001024|LXL04_001024|OH1004|PROTEIN

MENYEILEQIGKGSFASAHLVRHKHEKKRYVLKKIRLARQSDRTRRSALLEMELISTVQNPFIVEYKDSWVEKGCYACIVIAYCEGGDMAEAIKRANSVHFPEEKVCKWLVQLLVALDYLHVNHIIHRDVKCSNIFLTKDQDIRLGDFGLAKMLISDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCMYEMTAFKPAFKAFDMQSLIQKINKSIVSPLPTMYSGTFRGLIKSMLRKNPEMRPSAGDLLKHPHLQP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001024`
TK1151 ID	TkA01G566290
OH-1004 ID	LXL04_001024
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001024

Location Chr01:18655038-18657818 (-)

Description Similar to NEK1: Serine/threonine-protein kinase Nek1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g63280`	May be involved in plant development processes.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0636800`	May be involved in plant development processes.	No verified direct reference in this release
`Os12g0604700`	May be involved in plant development processes.	No verified direct reference in this release
`UniProt: A2ZMH2`	May be involved in plant development processes.	No verified direct reference in this release
`Os07g0176600`	May be involved in plant development processes (Probable).	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11.2009 · DOI: 10.1093/pcp/pcp026

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001024 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005886 plasma membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G63280

dosa:Os03g0636800

dosa:Os07g0176600

dosa:Os12g0604700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.667

Rank 1 · LXL04_001024 · OH-1004

Nucleus0.328

Rank 2 · LXL04_001024 · OH-1004

Cell membrane0.095

Rank 3 · LXL04_001024 · OH-1004

Mitochondrion0.056

Rank 4 · LXL04_001024 · OH-1004

Golgi apparatus0.048

Rank 5 · LXL04_001024 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase4-257 aa

PF07714.24PK_Tyr_Ser-Thr6-253 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001024	`PF00069.32`	Pkinase	4	257	5.4e-63	213.6
LXL04_001024	`PF07714.24`	PK_Tyr_Ser-Thr	6	253	1.2e-36	127.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8RXT4`	Arabidopsis thaliana	Serine/threonine-protein kinase Nek4	54.605%	Swiss-Prot	strong database homology
`Q10GB1`	Oryza sativa subsp. japonica	Serine/threonine-protein kinase Nek1	55.854%	Swiss-Prot	strong database homology
`Q2QMH1`	Oryza sativa subsp. japonica	Serine/threonine-protein kinase Nek2	57.213%	Swiss-Prot	strong database homology
`A2ZMH2`	Oryza sativa subsp. indica	Serine/threonine-protein kinase Nek2	57.213%	Swiss-Prot	strong database homology
`Q6ZEZ5`	Oryza sativa subsp. japonica	Serine/threonine-protein kinase Nek3	54.369%	Swiss-Prot	strong database homology

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