LXL04_000775 | RubberDandelionOmics

Gene overview

LXL04_000775

Reference: OH-1004 Chr: Chr01 Coordinates: 14199115-14201980 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1506 bp · LXL04_000775|LXL04_000775|OH1004|cDNA

ATGATCACGATAATGAACTCAATCCACTTAATATTAGTGATTTATCTCTCATTTAACATTTTCTTGGCACAATCCGCCCCTCAAAGTGCCATAGTTAGTCAACTTCCTGGTTTCGATGGCGCTCTACCATCCAAACACTATGCTGGGTATGTTACGGTAGATGAAAACCATGGCAAGAAATTGTTTTATTACTATGTGCTTTCAGAAAGAAACCCTTCTAAGGATCCGGTGGTTCTTTGGCTTAATGGTGGACCTGGTTG...

CDS

Download CDS FASTA

1506 bp · LXL04_000775|LXL04_000775|OH1004|CDS

ATGATCACGATAATGAACTCAATCCACTTAATATTAGTGATTTATCTCTCATTTAACATTTTCTTGGCACAATCCGCCCCTCAAAGTGCCATAGTTAGTCAACTTCCTGGTTTCGATGGCGCTCTACCATCCAAACACTATGCTGGGTATGTTACGGTAGATGAAAACCATGGCAAGAAATTGTTTTATTACTATGTGCTTTCAGAAAGAAACCCTTCTAAGGATCCGGTGGTTCTTTGGCTTAATGGTGGACCTGGTTG...

Protein

Download Protein FASTA

501 aa · LXL04_000775|LXL04_000775|OH1004|PROTEIN

MITIMNSIHLILVIYLSFNIFLAQSAPQSAIVSQLPGFDGALPSKHYAGYVTVDENHGKKLFYYYVLSERNPSKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEKTGSMPKLHLNPYTWTKVSNVIYLDSPAGVGLSYSGNQSDYITRDTTTALDSHKFLLEWFKLYPEFLSNPFFIAGESYAGVYVPMLSYEVMKGLDAGDIPTLNFKGYIVGNGVTDEVYDGNALVPFAHGMGLISDELYQEVTNECQGNYYSPVNNDC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000775`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000775

Location Chr01:14199115-14201980 (-)

Description Similar to CBP1: Serine carboxypeptidase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g12910`	Probable carboxypeptidase.	No verified direct reference in this release
`At3g25420`	Probable carboxypeptidase.	No verified direct reference in this release
`At3g10450`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0257000`	Serine carboxypeptidase 1.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_000775 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0019748 secondary metabolic process Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups Molecular Function

GO:0016752 sinapoyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT3G10450

ath:AT3G25420

ath:AT4G12910

dosa:Os12g0257000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.554

Rank 1 · LXL04_000775 · OH-1004

Extracellular0.196

Rank 2 · LXL04_000775 · OH-1004

Endoplasmic reticulum0.091

Rank 3 · LXL04_000775 · OH-1004

Cytoplasm0.090

Rank 4 · LXL04_000775 · OH-1004

Cell membrane0.068

Rank 5 · LXL04_000775 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450.29Peptidase_S1036-498 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000775	`PF00450.29`	Peptidase_S10	36	498	3.1e-140	469.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8L7B2`	Arabidopsis thaliana	Serine carboxypeptidase-like 20	64.516%	Swiss-Prot	strong database homology
`Q9LSV8`	Arabidopsis thaliana	Serine carboxypeptidase-like 21	62.575%	Swiss-Prot	strong database homology
`Q9SQX6`	Arabidopsis thaliana	Serine carboxypeptidase-like 7	37.630%	Swiss-Prot	moderate database homology
`P37890`	Oryza sativa subsp. japonica	Serine carboxypeptidase 1	66.139%	Swiss-Prot	strong database homology

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