LXL04_000672 | RubberDandelionOmics

Gene overview

LXL04_000672

Reference: OH-1004 Chr: Chr01 Coordinates: 12417374-12418082 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

525 bp · LXL04_000672|LXL04_000672|OH1004|cDNA

ATGAGTCCCAGTGCTAAAGTGATTCCTAAAATTGTGAAAACGAAGTCTTTTCCAGAAGTAAACAACGACGACGGGGCTGAAGCGCAGACGGCCGAGGGTTCAAAACCGAAGCTTAAGCCTTTACACTGGGACAAAGTCCGAGCAACCTCCGATCGAGCCACCGTATGGGACCAGCTAAAATCAAGCTCCTTTCAATTGAATGAGGACATAATGGAGTCCCTTTTTGGATGTAATTCCGGCGGTTCTGCTAAAAAAGAAGA...

CDS

Download CDS FASTA

525 bp · LXL04_000672|LXL04_000672|OH1004|CDS

ATGAGTCCCAGTGCTAAAGTGATTCCTAAAATTGTGAAAACGAAGTCTTTTCCAGAAGTAAACAACGACGACGGGGCTGAAGCGCAGACGGCCGAGGGTTCAAAACCGAAGCTTAAGCCTTTACACTGGGACAAAGTCCGAGCAACCTCCGATCGAGCCACCGTATGGGACCAGCTAAAATCAAGCTCCTTTCAATTGAATGAGGACATAATGGAGTCCCTTTTTGGATGTAATTCCGGCGGTTCTGCTAAAAAAGAAGA...

Protein

Download Protein FASTA

174 aa · LXL04_000672|LXL04_000672|OH1004|PROTEIN

MSPSAKVIPKIVKTKSFPEVNNDDGAEAQTAEGSKPKLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDIMESLFGCNSGGSAKKEDPRKSVVPPTIQENRVLDPKKSQNIAILLRALNVTQEEVSDALLDGNPDGLGAELLETLVKMAPTKEEEIKLGDYRGDISKLGSAKDF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000672`
TK1151 ID	TkA01G594770
OH-1004 ID	LXL04_000672
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000672

Location Chr01:12417374-12418082 (+)

Description Similar to FH6: Formin-like protein 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g67470`	Might be involved in the organization and polarity of the actin cytoskeleton.	No verified direct reference in this release
`At3g25500`	Might be involved in the organization and polarity of the actin cytoskeleton.	Overexpression of an Arabidopsis formin stimulates supernumerary actin cable formation from pollen tube cell membrane.2004 · DOI: 10.1105/tpc.016550 The formin homology 1 domain modulates the actin nucleation and bundling activity of Arabidopsis FORMIN1.2005 · DOI: 10.1105/tpc.105.030908

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0204100`	Formin-like protein 8.	No verified direct reference in this release
`Os01g0897700`	Formin-like protein 1.	No verified direct reference in this release
`Os10g0347800`	Formin-like protein 4.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000672 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0030036 actin cytoskeleton organization Biological Process

GO:0045010 actin nucleation Biological Process

GO:0051016 barbed-end actin filament capping Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005819 spindle Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009524 phragmoplast Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT3G25500

ath:AT5G67470

dosa:Os01g0897700

dosa:Os03g0204100

dosa:Os10g0347800

osa:4325107

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.644

Rank 1 · LXL04_000672 · OH-1004

Cell membrane0.290

Rank 2 · LXL04_000672 · OH-1004

Nucleus0.207

Rank 3 · LXL04_000672 · OH-1004

Golgi apparatus0.071

Rank 4 · LXL04_000672 · OH-1004

Endoplasmic reticulum0.036

Rank 5 · LXL04_000672 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02181.29FH232-174 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000672	`PF02181.29`	FH2	32	174	2.2e-38	133.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FJX6`	Arabidopsis thaliana	Formin-like protein 6	74.251%	Swiss-Prot	strong database homology
`Q9SE97`	Arabidopsis thaliana	Formin-like protein 1	62.585%	Swiss-Prot	strong database homology
`Q10Q99`	Oryza sativa subsp. japonica	Formin-like protein 8	71.429%	Swiss-Prot	strong database homology
`Q8S0F0`	Oryza sativa subsp. japonica	Formin-like protein 1	64.583%	Swiss-Prot	strong database homology
`Q8H8K7`	Oryza sativa subsp. japonica	Formin-like protein 4	68.085%	Swiss-Prot	strong database homology

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