LXL04_000641 | RubberDandelionOmics

Gene overview

LXL04_000641

Reference: OH-1004 Chr: Chr01 Coordinates: 11712353-11713786 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1434 bp · LXL04_000641|LXL04_000641|OH1004|cDNA

ATGATCACTCCACCAAATTGGGTACGAGGGGTTTGCATCGGAAGAGGCTCATTCGGAACTGTAAATCTCGCCGTCGATAAATCCGACGGTGGGGTGTTCGCCGTTAAGTCAGTGAAACAGAACTCCAGACGCTTCTCTCAAGCTTTGGAGAATGAGATTCGGATTCTCAAATCTTTGTCGTCTCCTTATGTCGTTGGGTATCTCCGCGATGATGTCACGGCGGATAATTCTTCGGTGGTTTACCGGAACTTGCATATGGA...

CDS

Download CDS FASTA

1434 bp · LXL04_000641|LXL04_000641|OH1004|CDS

ATGATCACTCCACCAAATTGGGTACGAGGGGTTTGCATCGGAAGAGGCTCATTCGGAACTGTAAATCTCGCCGTCGATAAATCCGACGGTGGGGTGTTCGCCGTTAAGTCAGTGAAACAGAACTCCAGACGCTTCTCTCAAGCTTTGGAGAATGAGATTCGGATTCTCAAATCTTTGTCGTCTCCTTATGTCGTTGGGTATCTCCGCGATGATGTCACGGCGGATAATTCTTCGGTGGTTTACCGGAACTTGCATATGGA...

Protein

Download Protein FASTA

477 aa · LXL04_000641|LXL04_000641|OH1004|PROTEIN

MITPPNWVRGVCIGRGSFGTVNLAVDKSDGGVFAVKSVKQNSRRFSQALENEIRILKSLSSPYVVGYLRDDVTADNSSVVYRNLHMEYMPGGTVADLAKHGEDATVRSYTRCIVSALSYIHARNIVHCDVKGKNVLVGGIPGKAKLADFGSALELNGAPVSGIRGSPLWMAPEVIRGEGQGPESDVWSLGCTVIEMVTGMPAWQDRGVDTLCQIGYSDDLPTLPGHFSDELRDFLNKCLIRVPSERWSCNQLLRHPFLLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000641`
TK1151 ID	TkA01G598060
OH-1004 ID	LXL04_000641
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.200
Protein coverage (%)	TK1151 75.856 / OH-1004 83.648 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000641

Location Chr01:11712353-11713786 (+)

Description Similar to MAPKKK17: Mitogen-activated protein kinase kinase kinase 17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g32510`	Component of the abscisic acid (ABA) signaling pathway that may act as ABA signal transducer in the context of abiotic stresses.	No verified direct reference in this release
`At1g05100`	Component of the abscisic acid (ABA) signaling pathway that acts as ABA signal transducer in the context of abiotic stresses.	An abscisic acid inducible Arabidopsis MAPKKK, MAPKKK18 regulates leaf senescence via its kinase activity.2015 · DOI: 10.1007/s11103-015-0295-0 Arabidopsis ABA-Activated Kinase MAPKKK18 is Regulated by Protein Phosphatase 2C ABI1 and the Ubiquitin-Proteasome Pathway.2015 · DOI: 10.1093/pcp/pcv146
`At1g54960`	Involved in cortical microtubules organization and stabilization by regulating the phosphorylation state of microtubule- associated proteins such as MAP65-1.	Arabidopsis homologs of nucleus- and phragmoplast-localized kinase 2 and 3 and mitogen-activated protein kinase 4 are essential for microtubule organization.2010 · DOI: 10.1105/tpc.109.071746
`At1g09000`	May be involved in an oxidative stress-mediated signaling cascade that phosphorylates downstream MAP kinases MPK3 and MPK6.	Functional analysis of oxidative stress-activated mitogen-activated protein kinase cascade in plants.2000 · DOI: 10.1073/pnas.97.6.2940 An Arabidopsis mitogen-activated protein kinase kinase kinase gene family encodes essential positive regulators of cytokinesis.2002 · DOI: 10.1105/tpc.001164

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000641 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006970 response to osmotic stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009653 anatomical structure morphogenesis Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

GO:0030435 sporulation resulting in formation of a cellular spore Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:1900057 positive regulation of leaf senescence Biological Process

KEGG gene cross-reference

ath:AT1G05100

ath:AT1G09000

ath:AT1G54960

ath:AT2G32510

ddi:DDB_G0283265

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.500

Rank 1 · LXL04_000641 · OH-1004

Cytoplasm0.447

Rank 2 · LXL04_000641 · OH-1004

Cell membrane0.155

Rank 3 · LXL04_000641 · OH-1004

Endoplasmic reticulum0.057

Rank 4 · LXL04_000641 · OH-1004

Plastid0.038

Rank 5 · LXL04_000641 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase11-258 aa

PF07714.24PK_Tyr_Ser-Thr13-254 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000641	`PF00069.32`	Pkinase	11	258	1.6e-56	192.3
LXL04_000641	`PF07714.24`	PK_Tyr_Ser-Thr	13	254	1.2e-27	97.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80888`	Arabidopsis thaliana	Mitogen-activated protein kinase kinase kinase 17	46.947%	Swiss-Prot	moderate database homology
`Q9ZVP5`	Arabidopsis thaliana	Mitogen-activated protein kinase kinase kinase 18	45.522%	Swiss-Prot	moderate database homology
`Q9FZ36`	Arabidopsis thaliana	Mitogen-activated protein kinase kinase kinase 2	38.667%	Swiss-Prot	moderate database homology
`O22040`	Arabidopsis thaliana	Mitogen-activated protein kinase kinase kinase ANP1	39.100%	Swiss-Prot	moderate database homology

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