LXL04_000615 | RubberDandelionOmics

Gene overview

LXL04_000615

Reference: OH-1004 Chr: Chr01 Coordinates: 11151517-11154044 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1685 bp · LXL04_000615|LXL04_000615|OH1004|cDNA

TTTACTTCAACGTCCAAAAACGCCAAAAATAACAGCTTCAAAAATCTCTCCATCACAAAATCGCTGCAACGTCAATGGCTTGCAGCTCGATCGCCATGGATAGAAGAGCACTTCCGATATCTCTGCACTCTATCCCTAAGCGCCAGCGTCCGCCGGACACTTTGGTTTCCAGAAACTCCGGCTCGAATACGAACTCAAAACTTCACTTCAGAGTTAGGGTTCAGTTCCTGTCTGGTTCGTATGTTCATGTTCATCTGAAT...

CDS

Download CDS FASTA

1611 bp · LXL04_000615|LXL04_000615|OH1004|CDS

ATGGCTTGCAGCTCGATCGCCATGGATAGAAGAGCACTTCCGATATCTCTGCACTCTATCCCTAAGCGCCAGCGTCCGCCGGACACTTTGGTTTCCAGAAACTCCGGCTCGAATACGAACTCAAAACTTCACTTCAGAGTTAGGGTTCAGTTCCTGTCTGGTTCGTATGTTCATGTTCATCTGAATAGTTCATGTGGGAGGAATCAGTTATGGAAGGTCAGGTCGGATGTCAAATCGGACCCGTACGAACTTTCCCAGTC...

Protein

Download Protein FASTA

536 aa · LXL04_000615|LXL04_000615|OH1004|PROTEIN

MACSSIAMDRRALPISLHSIPKRQRPPDTLVSRNSGSNTNSKLHFRVRVQFLSGSYVHVHLNSSCGRNQLWKVRSDVKSDPYELSQSAPESFKFKEKLGVGAMTKDDDGDEFVDNALPWWEEFPKRWTIVILCFSAFLLCNMDRVNMSIAILPMSSEFHWNSTTVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLAFGVIWWSVATILTPIAAKLGLPFLLIVRAFMGIGEGVAMPAMNNLLSKWVPVAERSRSLALVY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000615`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000615

Location Chr01:11151517-11154044 (-)

Description Similar to ANTR1: Sodium-dependent phosphate transport protein 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g29650`	Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner.	Arabidopsis ANTR1 is a thylakoid Na+-dependent phosphate transporter: functional characterization in Escherichia coli.2008 · DOI: 10.1074/jbc.m709371200
`At4g00370`	Inorganic phosphate and probable anion transporter.	AtPHT4;4 is a chloroplast-localized ascorbate transporter in Arabidopsis.2015 · DOI: 10.1038/ncomms6928
`At2g38060`	Inorganic phosphate and probable anion transporter.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0279700`	Probable anion transporter.	No verified direct reference in this release
`Os09g0570400`	Probable anion transporter.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000615 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006811 monoatomic ion transport Biological Process

GO:0006814 sodium ion transport Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009624 response to nematode Biological Process

GO:0010028 xanthophyll cycle Biological Process

GO:0015882 L-ascorbic acid transmembrane transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009706 chloroplast inner membrane Cellular Component

KEGG gene cross-reference

ath:AT2G29650

ath:AT2G38060

ath:AT4G00370

dosa:Os01g0279700

dosa:Os09g0570400

osa:4326905

osa:4347913

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.944

Rank 1 · LXL04_000615 · OH-1004

Mitochondrion0.040

Rank 2 · LXL04_000615 · OH-1004

Golgi apparatus0.032

Rank 3 · LXL04_000615 · OH-1004

Peroxisome0.029

Rank 4 · LXL04_000615 · OH-1004

Cytoplasm0.026

Rank 5 · LXL04_000615 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690.22MFS_1133-495 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000615	`PF07690.22`	MFS_1	133	495	3.1e-61	207.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O82390`	Arabidopsis thaliana	Sodium-dependent phosphate transport protein 1, chloroplastic	71.589%	Swiss-Prot	strong database homology
`Q8GX78`	Arabidopsis thaliana	Ascorbate transporter, chloroplastic	68.992%	Swiss-Prot	strong database homology
`Q7XJR2`	Arabidopsis thaliana	Probable anion transporter 3, chloroplastic	39.540%	Swiss-Prot	moderate database homology
`Q9SDI4`	Oryza sativa subsp. japonica	Probable anion transporter 1, chloroplastic	84.337%	Swiss-Prot	strong database homology
`Q652N5`	Oryza sativa subsp. japonica	Probable anion transporter 4, chloroplastic	73.662%	Swiss-Prot	strong database homology

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