LXL04_000139 | RubberDandelionOmics

Gene overview

LXL04_000139

Reference: OH-1004 Chr: Chr01 Coordinates: 3053009-3056682 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1458 bp · LXL04_000139|LXL04_000139|OH1004|cDNA

ATGCCAGGAGTTCCTTTCCATATAAACCCCTCTTTCTTCTCCTCTGCATCTGCATCTACATCTGCGTCTGATTTTCTTAATAAGTTAATTCTGTGCTTTTCGAACGTACTCCATCGACGTTACCCCTCCTCCAAGACTCCGTCTAATCTGGAGCTGAGAGAAGACGAAGAGGAAGGTCCTCCTTCTCAGGTTGAATCCGAGATTGTGACTAGACCTAGGCGTATTGCTCTCTTCGTTGAGCCATCTCCATTTGCGTACGT...

CDS

Download CDS FASTA

1458 bp · LXL04_000139|LXL04_000139|OH1004|CDS

ATGCCAGGAGTTCCTTTCCATATAAACCCCTCTTTCTTCTCCTCTGCATCTGCATCTACATCTGCGTCTGATTTTCTTAATAAGTTAATTCTGTGCTTTTCGAACGTACTCCATCGACGTTACCCCTCCTCCAAGACTCCGTCTAATCTGGAGCTGAGAGAAGACGAAGAGGAAGGTCCTCCTTCTCAGGTTGAATCCGAGATTGTGACTAGACCTAGGCGTATTGCTCTCTTCGTTGAGCCATCTCCATTTGCGTACGT...

Protein

Download Protein FASTA

485 aa · LXL04_000139|LXL04_000139|OH1004|PROTEIN

MPGVPFHINPSFFSSASASTSASDFLNKLILCFSNVLHRRYPSSKTPSNLELREDEEEGPPSQVESEIVTRPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVMVVTTHEGVPEEFHGAKLVGSRSFPFPWYQQVPLSLALSPRIINEVKNFKPDIIHASSPGIMVFGALAIAKMLSVPIVMSYHTHVPVYIPRYTFSWLVQPMWLVIKFLHRAADLTLVPSAAIAKDLQQYKVAAANTIRLWNKGVDSDSFHPK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000139`
TK1151 ID	TkA01G631500
OH-1004 ID	LXL04_000139
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 99.089 / OH-1004 89.691 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000139

Location Chr01:3053009-3056682 (-)

Description Similar to SQD2: Sulfoquinovosyl transferase SQD2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g01220`	Catalyzes the transfer of the sulfoquinovose moiety from UDP-sulfoquinovose to diacylglycerol during sulfolipid biosynthesis.	Arabidopsis disrupted in SQD2 encoding sulfolipid synthase is impaired in phosphate-limited growth.2002 · DOI: 10.1073/pnas.082696499

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000139 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008654 phospholipid biosynthetic process Biological Process

GO:0009247 glycolipid biosynthetic process Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0046488 phosphatidylinositol metabolic process Biological Process

GO:0046506 sulfolipid biosynthetic process Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0016020 membrane Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0000030 mannosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT5G01220

cgb:cg0554

cgl:Cgl0469

msb:LJ00_05530

msg:MSMEI_1080

msm:MSMEG_1113

mtc:MT0583

mtu:Rv0557

mtv:RVBD_0557

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.898

Rank 1 · LXL04_000139 · OH-1004

Mitochondrion0.081

Rank 2 · LXL04_000139 · OH-1004

Cytoplasm0.036

Rank 3 · LXL04_000139 · OH-1004

Cell membrane0.029

Rank 4 · LXL04_000139 · OH-1004

Nucleus0.029

Rank 5 · LXL04_000139 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13439.13Glyco_transf_489-255 aa

PF13579.13Glyco_trans_4_489-244 aa

PF00534.27Glycos_transf_1275-426 aa

PF13692.13Glyco_trans_1_4277-414 aa

PF13524.13Glyco_trans_1_2294-430 aa

PF20706.4GT4-conflict337-436 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000139	`PF13439.13`	Glyco_transf_4	89	255	9e-30	104.6
LXL04_000139	`PF13579.13`	Glyco_trans_4_4	89	244	3.2e-18	67.3
LXL04_000139	`PF00534.27`	Glycos_transf_1	275	426	3.3e-27	95.8
LXL04_000139	`PF13692.13`	Glyco_trans_1_4	277	414	7.1e-27	95.1
LXL04_000139	`PF13524.13`	Glyco_trans_1_2	294	430	5.6e-08	33.6
LXL04_000139	`PF20706.4`	GT4-conflict	337	436	5.7e-06	26.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8S4F6`	Arabidopsis thaliana	Sulfoquinovosyl transferase SQD2	76.179%	Swiss-Prot	strong database homology

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