LXL04_000115 | RubberDandelionOmics

Gene overview

LXL04_000115

Reference: OH-1004 Chr: Chr01 Coordinates: 2581858-2583355 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1107 bp · LXL04_000115|LXL04_000115|OH1004|cDNA

ATGGCGTTGAAGTGTAAACTGCGAAGTATTGTAGTTTGTTTGTGGAGAAGGCAGACATTATTGCGATCCACATCAAGGAATCTAAATACCCTTGCAACTGATAACCGAATCCTCAAGTCTCCTCCTCTTGTTTCCCTAGATTTCCCTGATTTATGGACTTCGAGTTCTACTTCCACCAGTTACGATGCTCCATCGACCCACAACCTCGGTAACGAAGAGATTGCTAGAATTATCGATGGAAAACAGATCGCAGATGAAAT...

CDS

Download CDS FASTA

1107 bp · LXL04_000115|LXL04_000115|OH1004|CDS

ATGGCGTTGAAGTGTAAACTGCGAAGTATTGTAGTTTGTTTGTGGAGAAGGCAGACATTATTGCGATCCACATCAAGGAATCTAAATACCCTTGCAACTGATAACCGAATCCTCAAGTCTCCTCCTCTTGTTTCCCTAGATTTCCCTGATTTATGGACTTCGAGTTCTACTTCCACCAGTTACGATGCTCCATCGACCCACAACCTCGGTAACGAAGAGATTGCTAGAATTATCGATGGAAAACAGATCGCAGATGAAAT...

Protein

Download Protein FASTA

368 aa · LXL04_000115|LXL04_000115|OH1004|PROTEIN

MALKCKLRSIVVCLWRRQTLLRSTSRNLNTLATDNRILKSPPLVSLDFPDLWTSSSTSTSYDAPSTHNLGNEEIARIIDGKQIADEIISAVGVEVRRMKNAIGEVPGLGVILVGERRDSLTYVNNKTKACEETGIKFELAQFPDTCTEDEVCDAIMRFNTDPSFHGILVQLPLPQHLNEEKILGVLRLEKDVDGFHPMNMGHLAMRGREPLFIPCTPKGCVELLIRSGVEIMGKNAVVIGRSNIVGLPVSLLLQRHNATV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000115`
TK1151 ID	TkA01G633700
OH-1004 ID	LXL04_000115
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000115

Location Chr01:2581858-2583355 (-)

Description Similar to FOLD1: Bifunctional protein FolD 1, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g38660`	Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.	No verified direct reference in this release
`At4g00620`	Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.	No verified direct reference in this release
`At3g12290`	Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.	No verified direct reference in this release
`At4g00600`	Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000115 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000105 L-histidine biosynthetic process Biological Process

GO:0006164 purine nucleotide biosynthetic process Biological Process

GO:0009086 methionine biosynthetic process Biological Process

GO:0009853 photorespiration Biological Process

GO:0035999 tetrahydrofolate interconversion Biological Process

GO:0046653 tetrahydrofolate metabolic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004477 methenyltetrahydrofolate cyclohydrolase activity Molecular Function

GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity Molecular Function

KEGG gene cross-reference

ath:AT2G38660

ath:AT3G12290

ath:AT4G00600

ath:AT4G00620

mta:Moth_1516

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.685

Rank 1 · LXL04_000115 · OH-1004

Plastid0.287

Rank 2 · LXL04_000115 · OH-1004

Cytoplasm0.071

Rank 3 · LXL04_000115 · OH-1004

Nucleus0.051

Rank 4 · LXL04_000115 · OH-1004

Cell membrane0.012

Rank 5 · LXL04_000115 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00763.29THF_DHG_CYH78-193 aa

PF02882.26THF_DHG_CYH_C214-364 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000115	`PF00763.29`	THF_DHG_CYH	78	193	3.7e-37	127.8
LXL04_000115	`PF02882.26`	THF_DHG_CYH_C	214	364	6.9e-57	191.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`A2RVV7`	Arabidopsis thaliana	Bifunctional protein FolD 1, mitochondrial	64.058%	Swiss-Prot	strong database homology
`O65271`	Arabidopsis thaliana	Bifunctional protein FolD 4, chloroplastic	63.140%	Swiss-Prot	strong database homology
`Q9LHH7`	Arabidopsis thaliana	Bifunctional protein FolD 2	58.305%	Swiss-Prot	strong database homology
`O65269`	Arabidopsis thaliana	Bifunctional protein FolD 3, chloroplastic	53.584%	Swiss-Prot	strong database homology

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