LXL04_000053 | RubberDandelionOmics

Gene overview

LXL04_000053

Reference: OH-1004 Chr: Chr01 Coordinates: 1236626-1239808 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

936 bp · LXL04_000053|LXL04_000053|OH1004|cDNA

ATGGCTTCCCCAACCTTTTCTTCTTTGTTTAAGCTTTCAACTTTTACTCTATGTTTATGGGTTCTGTTAGGGACTACTTCGGGTCAGCTATCAGCCAATTTCTATGCTAGAACGTGCCCTAATTTCCGTTCTGTTATAACACGAGCTGTGAATACAGCTGTTGCAAATGAAGCTCGCATGGGAGCTTTATTGCTCCGCCTCCATTTCCATGATTGTTTTGTTAATGGATGTGATGCATCCGTATTACTGGACGATACTGC...

CDS

Download CDS FASTA

936 bp · LXL04_000053|LXL04_000053|OH1004|CDS

ATGGCTTCCCCAACCTTTTCTTCTTTGTTTAAGCTTTCAACTTTTACTCTATGTTTATGGGTTCTGTTAGGGACTACTTCGGGTCAGCTATCAGCCAATTTCTATGCTAGAACGTGCCCTAATTTCCGTTCTGTTATAACACGAGCTGTGAATACAGCTGTTGCAAATGAAGCTCGCATGGGAGCTTTATTGCTCCGCCTCCATTTCCATGATTGTTTTGTTAATGGATGTGATGCATCCGTATTACTGGACGATACTGC...

Protein

Download Protein FASTA

311 aa · LXL04_000053|LXL04_000053|OH1004|PROTEIN

MASPTFSSLFKLSTFTLCLWVLLGTTSGQLSANFYARTCPNFRSVITRAVNTAVANEARMGALLLRLHFHDCFVNGCDASVLLDDTANFTGEKSAGPNSNSARGFDVIDTIKTQLESQCPGVVSCADILSAAARDSVVALGGPGWGAVFGRRDSTTASQSAANSNLPSPASSLSGLISSFSNKGFTANEMVALSGAHTIGQARCSIFRSRLYNENNLNSSFATSLRANCPSSGGDNNLAPLDASATSFDNRYFNDLISQR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000053`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000053

Location Chr01:1236626-1239808 (+)

Description Similar to PNC1: Cationic peroxidase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05340`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_000053 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0009809 lignin biosynthetic process Biological Process

GO:0010089 xylem development Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:1901430 positive regulation of syringal lignin biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004601 peroxidase activity Molecular Function

GO:0020037 heme binding Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ahf:112743807

ath:AT5G05340

zma:100125639

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.646

Rank 1 · LXL04_000053 · OH-1004

Lysosome / Vacuole0.090

Rank 2 · LXL04_000053 · OH-1004

Cytoplasm0.086

Rank 3 · LXL04_000053 · OH-1004

Endoplasmic reticulum0.068

Rank 4 · LXL04_000053 · OH-1004

Cell membrane0.053

Rank 5 · LXL04_000053 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141.29peroxidase48-276 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000053	`PF00141.29`	peroxidase	48	276	2.2e-81	273.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FLC0`	Arabidopsis thaliana	Peroxidase 52	64.981%	Swiss-Prot	strong database homology

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