LXL04_000021 | RubberDandelionOmics

Gene overview

LXL04_000021

Reference: OH-1004 Chr: Chr01 Coordinates: 509869-512268 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2400 bp · LXL04_000021|LXL04_000021|OH1004|cDNA

ATGGCTGCACCTTTTCATGTTCATGTTTTTGTTCTCACTGCAACCATATTATCCCATATAACGTCATCTTCTTCCTCCTTCCCAGGCCATGCATTATCTCGAGGATCATCTCTGTCAGTTGAAAACAAGGAAGATTTCTTAGTTTCACCCAATGGAGTTTTCACAGCCGGTTTTCATGAAGTCGGAGAGAATGCTTATAACTTTGCAGTGTGGTTCACGGAGGAAGCCACGCCATGGAATCGTACAGTGATCTGGATGGC...

CDS

Download CDS FASTA

2400 bp · LXL04_000021|LXL04_000021|OH1004|CDS

ATGGCTGCACCTTTTCATGTTCATGTTTTTGTTCTCACTGCAACCATATTATCCCATATAACGTCATCTTCTTCCTCCTTCCCAGGCCATGCATTATCTCGAGGATCATCTCTGTCAGTTGAAAACAAGGAAGATTTCTTAGTTTCACCCAATGGAGTTTTCACAGCCGGTTTTCATGAAGTCGGAGAGAATGCTTATAACTTTGCAGTGTGGTTCACGGAGGAAGCCACGCCATGGAATCGTACAGTGATCTGGATGGC...

Protein

Download Protein FASTA

799 aa · LXL04_000021|LXL04_000021|OH1004|PROTEIN

MAAPFHVHVFVLTATILSHITSSSSSFPGHALSRGSSLSVENKEDFLVSPNGVFTAGFHEVGENAYNFAVWFTEEATPWNRTVIWMANRDAPINGKRSKLSIWDDGNLVLTDADEFVVWSTQTKSISSLLQLQLQTTGNLVLHEGEKGEPLWQSFDHPTDTLLPNQLLAKTMQLVSSRSSTNYSSGFYKLFFDIDSILRILYDGPETATVFWPNPSIFLLDRRFLYRDNRSASLDSDGQFNSSDGFSFISADFMMRRRRI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000021`
TK1151 ID	TkA01G640850
OH-1004 ID	LXL04_000021
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.300
Protein coverage (%)	TK1151 100.000 / OH-1004 78.598 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000021

Location Chr01:509869-512268 (+)

Description Similar to PK1: Putative receptor protein kinase ZmPK1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g24080`	G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080.	No verified direct reference in this release
`At4g00340`	Serine/threonine-protein kinase.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0202500`	Involved in resistance against the herbivorous insect brown planthopper (N.lugens, BPH).	No verified direct reference in this release
`Os04g0202300`	Involved in resistance against the herbivorous insect brown planthopper (N.lugens, BPH).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000021 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006952 defense response Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0051707 response to other organism Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT4G00340

ath:AT5G24080

dosa:Os04g0202350

dosa:Os04g0202500

osa:9266608

zma:542378

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.824

Rank 1 · LXL04_000021 · OH-1004

Endoplasmic reticulum0.088

Rank 2 · LXL04_000021 · OH-1004

Cytoplasm0.078

Rank 3 · LXL04_000021 · OH-1004

Nucleus0.044

Rank 4 · LXL04_000021 · OH-1004

Extracellular0.036

Rank 5 · LXL04_000021 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01453.31B_lectin82-171 aa

PF00954.26S_locus_glycop258-324 aa

PF07714.24PK_Tyr_Ser-Thr519-795 aa

PF00069.32Pkinase520-794 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000021	`PF01453.31`	B_lectin	82	171	2.6e-26	92.8
LXL04_000021	`PF00954.26`	S_locus_glycop	258	324	1.4e-06	29.5
LXL04_000021	`PF07714.24`	PK_Tyr_Ser-Thr	519	795	4.7e-38	131.7
LXL04_000021	`PF00069.32`	Pkinase	520	794	1.2e-47	163.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FLV4`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080	29.756%	Swiss-Prot	weak database homology
`Q39203`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2	28.846%	Swiss-Prot	weak database homology
`Q0JEU6`	Oryza sativa subsp. japonica	G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3	30.456%	Swiss-Prot	moderate database homology
`Q7FAZ2`	Oryza sativa subsp. japonica	G-type lectin S-receptor-like serine/threonine-protein kinase LECRK2	29.950%	Swiss-Prot	weak database homology

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