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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA03G486290
Query referenceTK1151
LocationChr03:121713355-121716212 (+)
DescriptionSimilar to P67: Pentatricopeptide repeat-containing protein At4g16390%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_009969 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 16 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g16390 Involved in chloroplast RNA processing.
An Arabidopsis pentatricopeptide repeat protein, SUPPRESSOR OF VARIEGATION7, is required for FtsH-mediated chloroplast biogenesis.2010 · DOI: 10.1104/pp.110.164111
A var2 leaf variegation suppressor locus, SUPPRESSOR OF VARIEGATION3, encodes a putative chloroplast translation elongation factor that is important for chloroplast development in the cold.2010 · DOI: 10.1186/1471-2229-10-287
Mutation of the pentatricopeptide repeat-SMR protein SVR7 impairs accumulation and translation of chloroplast ATP synthase subunits in Arabidopsis thaliana.2013 · DOI: 10.1007/s10265-012-0527-1

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0215900 Involved in translation and accumulation of chloroplast ATP synthase subunits. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.378; coverage=82.182; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009658chloroplast organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=78.545; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010019chloroplast-nucleus signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.241; coverage=68.364; evalue=3.63e-45; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031425chloroplast RNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=78.545; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031930mitochondria-nucleus signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.241; coverage=68.364; evalue=3.63e-45; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042254ribosome biogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.131; coverage=81.697; evalue=1.62e-159; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045727positive regulation of translationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=78.545; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1901259chloroplast rRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.131; coverage=81.697; evalue=1.62e-159; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=78.545; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=78.545; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000166nucleotide bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=78.545; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.241; coverage=68.364; evalue=3.63e-45; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=78.545; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004530deoxyribonuclease I activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.131; coverage=81.697; evalue=1.62e-159; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0033902rRNA endonuclease activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.131; coverage=81.697; evalue=1.62e-159; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042134rRNA primary transcript bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=78.545; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G31400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.241; coverage=68.364; evalue=3.63e-45UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G16390KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.5; coverage=78.545; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G46580KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.131; coverage=81.697; evalue=1.62e-159UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os03g0215900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.698; coverage=80.242; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4332063KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.698; coverage=80.242; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGzma:100191483KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=48.378; coverage=82.182; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release