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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_038692
Query referenceOH1004
LocationChr09:48185698-48189533 (+)
DescriptionSimilar to PRORP1: Proteinaceous RNase P 1%2C chloroplastic/mitochondrial (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_038692 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 15 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g32230 Endonuclease RNase P responsible for the 5' maturation of tRNA precursors.
A single Arabidopsis organellar protein has RNase P activity.2010 · DOI: 10.1038/nsmb.1812
Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing.2012 · DOI: 10.1073/pnas.1209062109
At4g21900 Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. No verified direct reference in this release
At2g16650 Endonuclease RNase P responsible for the 5' maturation of tRNA precursors.
Nuclear Protein-Only Ribonuclease P2 Structure and Biochemical Characterization Provide Insight into the Conserved Properties of tRNA 5' End Processing Enzymes.2016 · DOI: 10.1016/j.jmb.2015.11.025

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0001682tRNA 5'-leader removalBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.586; coverage=92.042; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.336; coverage=84.429; evalue=2.8e-144; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008033tRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.586; coverage=92.042; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043144sno(s)RNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.336; coverage=84.429; evalue=2.8e-144; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090646mitochondrial tRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.21; coverage=42.907; evalue=1.97e-12; UniProt GO evidence=IMP:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0097745mitochondrial tRNA 5'-end processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=21.535; coverage=81.142; evalue=5.16e-14; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140040mitochondrial polycistronic RNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.21; coverage=42.907; evalue=1.97e-12; UniProt GO evidence=IMP:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.336; coverage=84.429; evalue=2.8e-144; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.586; coverage=92.042; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005759mitochondrial matrixCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=21.535; coverage=81.142; evalue=5.16e-14; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.586; coverage=92.042; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030678mitochondrial ribonuclease P complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=21.535; coverage=81.142; evalue=5.16e-14; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042645mitochondrial nucleoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=21.535; coverage=81.142; evalue=5.16e-14; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004526ribonuclease P activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.586; coverage=92.042; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.586; coverage=92.042; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G16650KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.0; coverage=86.505; evalue=3.94e-135UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G32230KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.586; coverage=92.042; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G21900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.336; coverage=84.429; evalue=2.8e-144UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdme:Dmel_CG15896KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=26.21; coverage=42.907; evalue=1.97e-12UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:9692KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=21.535; coverage=81.142; evalue=5.16e-14UniProtKB/Swiss-Prot DAT 2026 current_release