Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_036930 |
|---|---|
| Query reference | OH1004 |
| Location | Chr08:50261759-50262283 (+) |
| Description | Similar to Os03g0743400: Probable histone H2A variant 3 (Oryza sativa subsp. japonica OX%3D39947) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_036930 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 11 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g54560 |
Variant histone H2A which may replace conventional H2A in a subset of nucleosomes. | No verified direct reference in this release |
At2g38810 |
Variant histones H2A are synthesized throughout the cell cycle and are very different from classical S-phase regulated H2A. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os03g0743400 |
Variant histones H2A are synthesized throughout the cell cycle and are very different from classical S-phase regulated H2A. | No verified direct reference in this release |
Os03g0162200 |
Variant histones H2A are synthesized throughout the cell cycle and are very different from classical S-phase regulated H2A. | No verified direct reference in this release |
Os10g0418000 |
Variant histones H2A are synthesized throughout the cell cycle and are very different from classical S-phase regulated H2A. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006970 | response to osmotic stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=88.971; coverage=100.0; evalue=1.03e-76; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010468 | regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=88.971; coverage=100.0; evalue=1.03e-76; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016048 | detection of temperature stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=88.971; coverage=100.0; evalue=1.03e-76; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031507 | heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=88.321; coverage=100.735; evalue=6.69e-77; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=88.971; coverage=100.0; evalue=1.03e-76; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000786 | nucleosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=88.321; coverage=100.735; evalue=6.69e-77; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=88.321; coverage=100.735; evalue=6.69e-77; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=85.294; coverage=100.0; evalue=2.42e-75; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=88.321; coverage=100.735; evalue=6.69e-77; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030527 | structural constituent of chromatin | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=88.321; coverage=100.735; evalue=6.69e-77; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046982 | protein heterodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=88.321; coverage=100.735; evalue=6.69e-77; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G38810 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=85.294; coverage=100.0; evalue=2.42e-75 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G54560 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=88.971; coverage=100.0; evalue=1.03e-76 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os03g0162200 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=84.783; coverage=101.471; evalue=5.39e-72 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os03g0743400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=88.321; coverage=100.735; evalue=6.69e-77 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os10g0418000 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=87.05; coverage=102.206; evalue=5.39e-71 | UniProtKB/Swiss-Prot DAT 2026 current_release |